Abstract
A fluorescence polarization assay can be used to evaluate the strength of a protein-protein interaction. A green fluorescent protein variant is fused to one of the protein partners. The formation of a complex is then deduced from an increase in fluorescence polarization, and the equilibrium dissociation constant of the complex is determined in a homogeneous aqueous environment. The assay is demonstrated by using the interaction of the S-protein and S-peptide fragments of ribonuclease A as a case study.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
LeTilly, V. and Royer, C. A. (1993) Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding. Biochemistry 32, 7753–7758.
Heyduk, T., Ma, Y., Tang, H., and Ebright, R. H. (1996) Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction. Methods Enzymol. 274, 492–503.
Malpeli, G., Folli, C., and Berni, R. (1996) Retinoid binding to retinol-binding protein and the interference with the interaction with transthyretin. Biochim. Biophys. Acta 1294, 48–54.
Fisher, B. M., Ha, J.-H., and Raines, R. T. (1998) Coulombic forces in protein-RNA interactions: binding and cleavage by ribonuclease A and variants at Lys7, Arg10 and Lys66. Biochemistry 37, 12,121–12,132.
Park, S.-H. and Raines, R. T. (1997) Green fluorescent protein as a signal for protein-protein interactions. Protein Sci. 6, 2344–2349.
Park, S. H. and Raines, R. T. (2000) Green fluorescent protein chimeras to probe protein-protein interactions. Methods Enzymol. 328, 251–261.
Jameson, D. M. and Sawyer, W. H. (1995) Fluorescence anisotropy applied to biomolecular interactions. Methods Enzymol. 246, 283–300.
Ormö, M., Cubitt, A. B., Kallio, K., Gross, L. A., Tsien, R. Y., and Remington, S. J. (1996) Crystal structure of the Aeqourea victoria green fluorescent protein. Science 237, 1392–1395.
Yang, F., Moss, L. G., and Phillips, G. N., Jr. (1996) The molecular structure of green fluorescent protein. Nature Biotechnol. 14, 1246–1251.
Richards, F. M. and Vithayathil, P. J. (1959) The preparation of subtilisin modified ribonuclease and separation of the peptide and protein components. J. Biol. Chem. 234, 1459–1465.
Schreier, A. A. and Baldwin, R. L. (1977) Mechanism of dissociation of S-peptide from ribonuclease S. Biochemistry 16, 4203–4209.
Baldwin, R. L. (1996) How Hofmeister ion interactions affect protein stability. Biophys. J. 71, 2056–2063.
Connelly, P. R., Varadarajan, R., Sturtevant, J. M., and Richards, F. M. (1990) Thermodynamics of protein-peptide interactions in the ribonuclease S system studied by titration calorimetry. Biochemistry 29, 6108–6114.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2004 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Park, SH., Raines, R.T. (2004). Fluorescence Polarization Assay to Quantify Protein-Protein Interactions. In: Fu, H. (eds) Protein-Protein Interactions. Methods in Molecular Biology, vol 261. Humana Press. https://doi.org/10.1385/1-59259-762-9:161
Download citation
DOI: https://doi.org/10.1385/1-59259-762-9:161
Publisher Name: Humana Press
Print ISBN: 978-1-58829-120-2
Online ISBN: 978-1-59259-762-8
eBook Packages: Springer Protocols