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Characterization of Protein-Protein Interactions by Isothermal Titration Calorimetry

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Book cover Protein-Protein Interactions

Part of the book series: Methods in Molecular Biology ((MIMB,volume 261))

Abstract

Isothermal titration calorimetry (ITC) is a powerful technique to study both protein-ligand and protein-protein interactions. This methods chapter is devoted to describing protein-protein interactions, in particular, the association between two different proteins and the self-association of a protein into homodimers. ITC is the only technique that determines directly the thermodynamic parameters of a given reaction: ΔG, ΔH, ΔS, and ΔC P. Isothermal titration calorimeters have evolved over the years and one of the latest models is the VP-ITC produced by Microcal, Inc. In this chapter we will be describing the general procedure for performing an ITC experiment as well as for the specific cases of porcine pancreatic trypsin binding to soybean trypsin inhibitor and the dissociation of bovine pancreatic α-chymotrypsin.

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References

  1. Freire, E., Mayorga, O. L., and Straume, M. (1990) Isothermal titration calorimetry. Anal. Chem. 62, 950A–959A.

    Article  CAS  Google Scholar 

  2. Doyle, M. L. (1997) Characterization of binding interactions by isothermal titration. Curr. Opini. Biotechnol. 8, 31–35.

    Article  CAS  Google Scholar 

  3. Jelessarov, I. and Bosshard, H. R. (1999) Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition. J. Mol. Recogn. 12, 3–18.

    Article  Google Scholar 

  4. Leavitt, S. and Freire, E. (2001) Direct measurement of protein binding energetics by isothermal titration calorimetry. Curr. Opin. Struct. Biol. 11, 560–566.

    Article  PubMed  CAS  Google Scholar 

  5. Velazquez-Campoy, A., Todd, M. J., and Freire, E. (2000) HIV-1 protease inhibitors: enthalpic versus entropic optimization of the binding affinity. Biochemistry 39, 2201–2207.

    Article  PubMed  CAS  Google Scholar 

  6. Todd, M. J., Luque I., Velazquez-Campoy A., and Freire E. (2000) Thermodynamic basis of resistance to HIV-1 protease inhibition: calorimetric analysis of the V82F/I84V active site resistant mutant. Biochemistry 39, 11,876–11,883.

    Article  PubMed  CAS  Google Scholar 

  7. Velazquez-Campoy, A., Kiso, Y., and Freire, E. (2001) The binding energetics of first-and second-generation HIV-1 protease inhibitors: Implications for drug design. Arch. Biochem. Biophys. 390, 169–175.

    Article  PubMed  CAS  Google Scholar 

  8. Velazquez-Campoy, A. and Freire, E. (2001) Incorporating target heterogeneity in drug design. J. Cell. Biochem. 37, 82–88.

    Article  Google Scholar 

  9. Ward, W. H. and Holdgate, G. A. (2001) Isothermal titration calorimetry in drug discovery. Prog. Med. Chem. 38, 309–376.

    Article  PubMed  CAS  Google Scholar 

  10. Parker, M. H., Lunney, E. A., Ortwine, D. F., Pavlovsky, A. G., Humblet, C., and Brouillette, C. G. (1999) Analysis of the binding of hydroxamic acid and carboxylic acid inhibitors to the stromelysin-1 (matrix metalloproteinase-3) catalytic domain by isothermal titration calorimetry. Biochemistry 38, 13,592–13,601.

    Article  PubMed  CAS  Google Scholar 

  11. Myszka, D. G, Sweet, R. W., Hensley, P., et al. (1997) Energetics of the HIV gp120-CD4 binding reaction. Proc. Natl. Acad. Sci. USA 97, 9026–9031.

    Article  Google Scholar 

  12. Burrows, S. D., Doyle, M. L., Murphy, K. P., et al. (1994) Determination of the monomer-dimer equilibrium of interleukin-8 reveals it is a monomer at physiological concentrations. Biochemistry 33, 12,741–12,745.

    Article  PubMed  CAS  Google Scholar 

  13. Wiseman, T., Williston, S., Brandts, J. F., and Nin, L.N. (1989) Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal. Biochem. 179, 131–137.

    Article  PubMed  CAS  Google Scholar 

  14. Doyle, M. L., Louie, G. L., Dal Monte, P. R., and Sokoloski, T. D. (1995) Tight binding affinities determined from linkage to protons by titration calorimetry. Meth. Enzymol. 259, 183–194.

    Article  PubMed  CAS  Google Scholar 

  15. Baker, B. M. and Murphy, K. P. (1996) Evaluation of linked protonation effects in protein binding using isothermal titration calorimetry. Biophys. J. 71, 2049–2055.

    Article  PubMed  CAS  Google Scholar 

  16. Doyle, M. L. and Hensley, P. (1998) Tight ligand binding affinities determined from thermodynamic linkage to temperature by titration calorimetry. Meth. Enzymol. 295, 88–99.

    Article  PubMed  CAS  Google Scholar 

  17. Sigurskjold, B. W. (2000) Exact analysis of competition ligand binding by displacement isothermal titration calorimetry. Anal. Biochem. 277, 260–266.

    Article  PubMed  CAS  Google Scholar 

  18. Zhang, Y.-L. and Zhang, Z.-Y. (1998) Low-affinity binding determined by titration calorimetry using a high-affinity coupling ligand: a thermodynamic study of ligand binding to protein tyrosine phosphatase 1B. Anal. Biochem. 261, 139–148.

    Article  PubMed  CAS  Google Scholar 

  19. Gomez, J., Hilser, V. J., and Freire, E. (1995) The heat capacity of proteins. Proteins 22, 404–412.

    Article  PubMed  CAS  Google Scholar 

  20. Murphy, K. P. and Freire, E. (1992) Thermodynamics of structural stability and cooperative folding behavior in proteins. Adv. Prot. Chem. 43, 313–361.

    Article  CAS  Google Scholar 

  21. Biltonen, R. L. and Langerman, N. (1979) Microcalorimetry for biological chemistry: experimental design, data analysis and interpretation. Meth. Enzymol. 61, 287–319.

    Article  PubMed  CAS  Google Scholar 

  22. Gomez, J. and Freire, E. (1995) Thermodynamic mapping of the inhibitor site of the aspartic protease endothiapepsin. J. Mol. Biol. 252, 337–350.

    Article  PubMed  CAS  Google Scholar 

  23. Velazquez-Campoy, A., Luque, I., Todd, M. J., Milutinovich, M., Kiso, Y., and Freire, E. (2000) Thermodynamic dissection of the binding energetics of KNI-272, a potent HIV-1 protease inhibitor. Prot. Sci. 9, 1801–1809.

    Article  CAS  Google Scholar 

  24. Baker, B. M. and Murphy, K. P. (1997) Dissecting the energetics of a protein-protein interaction: the binding of ovomucoid third domain to elastase. J. Mol. Biol. 268, 557–569.

    Article  PubMed  CAS  Google Scholar 

  25. Wyman, J. and Gill, S. J. (1990) Binding and linkage: functional chemistry of biological macromolecules. University Science Books, Mill Valley, CA.

    Google Scholar 

  26. Edgcomb, S. P., Baker, B. M., and Murphy, K. P. (2000) The energetics of phosphate binding to a protein complex. Prot. Sci. 9, 927–933.

    Article  CAS  Google Scholar 

  27. Indyk, L. and Fisher, H. F. (1998) Theoretical aspects of isothermal titration calorimetry. Meth. Enzymol. 295, 350–364.

    Article  PubMed  CAS  Google Scholar 

  28. Patel, C. N., Noble, S. M., Weatherly, G. T., Tripathy, A., Winzor, D. J., and Pielak, G. J. (2002) Effects of molecular crowding by saccharides on α-chymotrypsin dimerization. Prot. Sci. 11, 997–1003.

    Article  CAS  Google Scholar 

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© 2004 Humana Press Inc., Totowa, NJ

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Velazquez-Campoy, A., Leavitt, S.A., Freire, E. (2004). Characterization of Protein-Protein Interactions by Isothermal Titration Calorimetry. In: Fu, H. (eds) Protein-Protein Interactions. Methods in Molecular Biology, vol 261. Humana Press. https://doi.org/10.1385/1-59259-762-9:035

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  • DOI: https://doi.org/10.1385/1-59259-762-9:035

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-120-2

  • Online ISBN: 978-1-59259-762-8

  • eBook Packages: Springer Protocols

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