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Expression Cloning

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Part of the book series: Methods in Molecular Medicine™ ((MIMM,volume 94))

Abstract

Expression cloning involves the selection of specific polypeptides, generated from a cDNA or genomic DNA library, based on certain characteristics of the expressed proteins, such as antibody or ligand binding, recognition by T-cells, function, or complementation of cell defects. Here we describe the detailed construction of a genomic, random shear lambda expression library, adsorption of anti Escherichia coli antibody from antiserum, the screening of an expression library with specific antisera, and the cloning of genes with potential use in the diagnosis of infectious disease. This approach has been used successfully by our laboratory for the discovery of antigenic components of diagnostics and vaccines for several infectious agents including: Mycobacterium tuberculosis, Anaplasma phagocytophila (formerly Ehrlichia spp. or E. phagocytophila), Babesia microti, Trypanosoma cruzi, Leishmania chagasi, and Chlamydia spp.

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References

  1. Seed, B. (1995) Developments in expression cloning. Curr. Opin. Biotechnol. 6, 567–573.

    Article  PubMed  CAS  Google Scholar 

  2. Young, R. A. and Davis, R. W. (1983) Efficient isolation of genes by using antibody probes. Proc. Natl. Acad. Sci. USA 80, 1194–1198.

    Article  PubMed  CAS  Google Scholar 

  3. Mierendorf, R. C., Percy, C., and Young, R. A. (1987) Gene isolation by screening lambda gt11 libraries with antibodies. Methods Enzymol. 152, 458–469.

    Article  PubMed  CAS  Google Scholar 

  4. Shastri, N. (1996) Needles in haystacks: identifying specific peptide antigens for T cells. Curr. Opin. Immunol. 8, 271–277.

    Article  PubMed  CAS  Google Scholar 

  5. Alderson, M. R., Bement, T., Day, C. H., et al. (2000) Expression cloning of an immunodominant family of Mycobacterium tuberculosis antigens using human CD4+ T cells. J. Exp. Med. 191, 551–559.

    Article  PubMed  CAS  Google Scholar 

  6. Skeiky, Y. A. W., Ovendale, P. J., Jen, S., et al. (2000) T cell expression cloning of a Mycobacterium tuberculosis gene encoding a protective antigen associated with the early control of infection. J. Immunol. 165, 7140–7149.

    PubMed  CAS  Google Scholar 

  7. Chien, C.-T., Bartel, P. S., Sternglanz, R., and Fields, S. (1991) The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. USA 88, 9578–9582.

    Article  PubMed  CAS  Google Scholar 

  8. Simonsen, H. and Lodish, H. F. (1994) Cloning by function: expression cloning in mammalian cells. Trends Pharmacol. Sci. 15, 437–441.

    Article  PubMed  CAS  Google Scholar 

  9. Stark, G. R. and Gudkov, A. V. (1999) Forward genetics in mammalian cells: functional approaches to gene discovery. Hum. Mol. Genet. 8, 1925–1938.

    Article  PubMed  CAS  Google Scholar 

  10. Steimle, V. and Mach, B. (1995) Complementation cloning of mammalian transcriptional regulators: the example of MHC class II gene regulators. Curr. Opin. Genet. Dev. 5, 646–651.

    Article  PubMed  CAS  Google Scholar 

  11. Dillon, D. C., Alderson, M. R., Day, C. H., et al. (2000) Molecular and immunological characterization of Mycobacterium tuberculosis CFP-10, an immunodiagnostic antigen missing in Mycobacterium bovis BCG. J. Clin. Microbiol. 38, 3285–3290.

    PubMed  CAS  Google Scholar 

  12. Lodes, M. J., Dillon, D. C., Mohamath, R., et al. (2001) Serological expression cloning and immunological evaluation of MTB48, a novel Mycobacterium tuberculosis antigen. J. Clin. Microbiol. 39, 2485–2493.

    Article  PubMed  CAS  Google Scholar 

  13. Houghton, R. L., Lodes, M. J., Dillon, D. C., et al. (2002) Use of multiepitope polyproteins in serodiagnosis of active tuberculosis. Clin. Diagn. Lab. Immunol. 9, 883–891.

    PubMed  CAS  Google Scholar 

  14. Lodes, M. J., Mohamath, R., Reynolds, L. D., et al. (2001) Serodiagnosis of human granulocytic ehrlichiosis by using novel combinations of immunoreactive recombinant proteins. J. Clin. Microbiol. 39, 2466–2476.

    Article  PubMed  CAS  Google Scholar 

  15. Lodes, M. J., Houghton, R. L., Bruinsma, E. S., et al. (2000) Serological expression cloning of novel immunoreactive antigens of Babesia microti. Infect. Immun. 68, 2783–2790.

    Article  PubMed  CAS  Google Scholar 

  16. Burns, J. M. Jr., Shreffler, W. G., Rosman, D. E., Sleath, P. R., March, C. J., and Reed, S. G. (1992) Identification and synthesis of a major conserved antigenic epitope of Trypanosoma cruzi. Proc. Natl. Acad. Sci. USA 89, 1239–1243.

    Article  PubMed  CAS  Google Scholar 

  17. Skeiky, Y. A. W., Benson, D. R., Guderian, J., et al. (1993) Trypanosoma cruzi acidic ribosomal P protein gene family: novel P proteins encoding unusual cross-reactive epitopes. J. Immunol. 151, 5504–5515.

    PubMed  CAS  Google Scholar 

  18. Skeiky, Y. A. W., Benson, D. R., Elwasila, M., Badaro, R., Burns, J. M., and Reed, S. G. (1994) Shared antigens between Leishmania and Trypanosoma cruzi: characterization of the Leishmania chagasi acidic ribosomal protein P0. Infect. Immun. 62, 1643–1651.

    PubMed  CAS  Google Scholar 

  19. Houghton, R. L., Benson, D. R., Reynolds, L. D., et al. (1999) A multi-epitope synthetic peptide and recombinant protein for the detection of antibodies to Trypanosoma cruzi in radioimmunoprecipitation-confirmed and consensus-positive sera. J. Infect. Dis. 179, 1226–1234.

    Article  PubMed  CAS  Google Scholar 

  20. Houghton, R. L., Benson, D. R., Reynolds, L., et al. (2000) Multiepitope synthetic peptide and recombinant protein for the detection of antibodies to Trypanosoma cruzi in patients with treated or untreated Chagas’ disease. J. Infect. Dis. 181, 325–330.

    Article  PubMed  CAS  Google Scholar 

  21. Skeiky, Y. A., Guderian, J. A., Benson, D. R., et al. (1995) A recombinant Leishmania antigen that stimulates human peripheral blood mononuclear cells to express a Th1-type cytokine profile and to produce interleukin 12. J. Exp. Med. 181, 1527–1537.

    Article  PubMed  CAS  Google Scholar 

  22. Skeiky, Y. A. W., Coler, R. N., Brannon, M., et al. (2002) Protective efficacy of a tandemly linked, multi-subunit recombinant leishmanial vaccine (Leish-111f) formulated in MPL adjuvant. Vaccine 20, 3292–3303; erratum 20, 3783.

    Article  PubMed  CAS  Google Scholar 

  23. Burns, J. M. Jr., Shreffler, W. G., Benson, D. R., Ghalib, H. W., Badaro, R., and Reed, S. G. (1993) Molecular characterization of a kinesin-related antigen of Leishmania chagasi that detects specific antibody in African and American visceral leishmaniasis. Proc. Natl. Acad. Sci. USA 90, 775–779.

    Article  PubMed  CAS  Google Scholar 

  24. Skeiky, Y. A. W., Benson, D. R., Guderian, J., Bacelar, O., Carvalho, E. M., and Reed, S. G. (1995) Leishmaniasis patient immune responses to Leishmania and human heat shock proteins. Infect. Immun. 63, 4105–4114.

    PubMed  CAS  Google Scholar 

  25. Bhatia, A., Daifalla, N. S., Jen, S., Badaro, R., Reed, S. G., and Skeiky, Y. A. (1999) Cloning, characterization and serological evaluation of K9 and K26: two related hydrophilic antigens of Leishmania chagasi. Mol. Biochem. Parasitol. 102, 249–261.

    Article  PubMed  CAS  Google Scholar 

  26. Webb, J. R., Vedvick, T. S., Alderson, M. R., et al. (1998) Molecular cloning, expression, and immunogenicity of MTB12, a novel low-molecular-weight antigen secreted by Mycobacterium tuberculosis. Infect. Immun. 66, 4208–4214.

    PubMed  CAS  Google Scholar 

  27. Dillon, D. C., Alderson, M. R., Day, C. H., et al. (1999) Molecular characterization and human T-cell responses to a member of a novel Mycobacterium tuberculosis mtb39 gene family. Infect. Immun. 67, 2941–2950.

    PubMed  CAS  Google Scholar 

  28. Skeiky, Y. A. W., Lodes, M. J., Guderian, J. A., et al. (1999) Cloning, expression, and immunological evaluation of two putative secreted serine protease antigens of Mycobacterium tuberculosis. Infect Immun. 67, 3998–4007.

    PubMed  CAS  Google Scholar 

  29. Sahin, U., Tureci, O., Schmitt, H., et al. (1995) Human neoplasms elicit multiple specific immune responses in the autologous host. Proc. Natl. Acad. Sci. USA 92, 11,810–11,813.

    Article  PubMed  CAS  Google Scholar 

  30. Frischauf, A. M., Lehrach, H., Poustka, A., and Murray, N. (1983) Lambda replacement vectors carrying polylinker sequences. J. Mol. Biol. 170, 827–842.

    Article  PubMed  CAS  Google Scholar 

  31. Murray, N. E. (1991) Special uses of lambda phage for molecular cloning. Methods Enzymol. 204, 280–301.

    Article  PubMed  CAS  Google Scholar 

  32. Chauthaiwale, V. M., Therwath, A., and Deshpande, V. V. (1992) Bacteriophage lambda as a cloning vector. Microbiol. Rev. 56, 577–591.

    PubMed  CAS  Google Scholar 

  33. Christensen, A. C. (2001) Bacteriophage lambda-based expression vectors. Mol. Biotechnol. 17, 219–224.

    Article  PubMed  CAS  Google Scholar 

  34. Crameri, R. and Kodzius, R. (2001) The powerful combination of phage surface display of cDNA libraries and high throughput screening. Comb. Chem. High Throughput Screen. 4, 145–155.

    PubMed  CAS  Google Scholar 

  35. Walter, G., Konthur, Z., and Lehrach, H. (2001) High-throughput screening of surface displayed gene products. Comb. Chem. High Throughput Screen. 4, 193–205.

    PubMed  CAS  Google Scholar 

  36. Rhyner, C., Kodzius, R., and Crameri, R. (2002) Direct selection of cDNAs from filamentous phage surface display libraries: potential and limitations. Curr. Pharmaceut. Biotechnol. 3, 13–21.

    Article  CAS  Google Scholar 

  37. Song, O. and Fields, S. (1989) A novel genetic system to detect protein-protein interactions. Nature 340, 245–246.

    Article  PubMed  Google Scholar 

  38. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning, A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

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Lodes, M.J., Dillon, D.C., Houghton, R.L., Skeiky, Y.A.W. (2004). Expression Cloning. In: Decler, J., Reischl, U. (eds) Molecular Diagnosis of Infectious Diseases. Methods in Molecular Medicine™, vol 94. Humana Press. https://doi.org/10.1385/1-59259-679-7:91

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  • DOI: https://doi.org/10.1385/1-59259-679-7:91

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-221-6

  • Online ISBN: 978-1-59259-679-9

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