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In Vitro Excision Repair Assay in Schizosaccharomyces pombe

  • Protocol
DNA Repair Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 113))

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Abstract

The measurement of DNA excision repair activity in vitro, originally developed by Wood and co-workers (1), utilizes transcriptionally active protein extracts obtained from mammalian cells by the method of Manley et al. (2) (see Chapter 29). Nucleotide excision repair (NER), which requires more than 20 proteins in vitro, can process a large variety of lesions according to the following mechanism:

  1. 1.

    Recognition of the DNA lesion.

  2. 2.

    Incision on both sides of the lesion.

  3. 3.

    Excision of the damaged oligonucleotide.

  4. 4.

    DNA polymerization and ligation.

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References

  1. Wood, R. D., Robins, P., and Lindahl, T. (1988) Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts. Cell 53, 97–106.

    Article  PubMed  CAS  Google Scholar 

  2. Manley, J. L., Fire, A., Samuels, M. and Sharp, P. A. (1983) In vitro transcription: whole-cell extract. Methods Enzymol. 101, 568–582.

    Article  PubMed  CAS  Google Scholar 

  3. Salles, B., Frit, P., Provot, C., Jaeg, J. P., and Calsou, P. (1995) In vitro eukaryotic DNA excision repair assays: an overview. Biochimie 77, 796–802.

    Article  PubMed  CAS  Google Scholar 

  4. Calsou, P. and Salles, B. (1994) Properties of damage-dependent DNA incision by nucleotide excision repair in human cell-free extracts. Nucleic Acids Res. 22, 4937–4942.

    Article  PubMed  CAS  Google Scholar 

  5. Calsou, P. and Salles, B. (1994) Measurement of damage-specific DNA incision by nucleotide excision repair in vitro. Biochem. Biophys. Res. Commun. 202, 788–795.

    Article  PubMed  CAS  Google Scholar 

  6. Wood, R. D. (1989) Repair of pyrimidine dimer ultraviolet light photoproducts by human cell extracts. Biochemistry 28, 8287–8292.

    Article  PubMed  CAS  Google Scholar 

  7. Wang, Z., Wu, X., and Friedberg, E. C. (1992) Excision repair of DNA in nuclear extracts from the yeast Saccharomyces cerevisiae. Biochemistry 31, 3694–3702.

    Article  PubMed  CAS  Google Scholar 

  8. Wang, Z., Wu, X., and Friedberg, E. C. (1993) Nucleotide-excision repair of DNA in cell-free extracts of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 90, 4907–4911.

    Article  PubMed  CAS  Google Scholar 

  9. Bowman, K. K., Sidik, K., Smith, C. A., Taylor, J. S., Doetsch, P. W., and Freyer, G. A. (1994) A new ATP-independent DNA endonuclease from Schizosaccha-romyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucleic Acids Res. 22, 3026–3032.

    Article  PubMed  CAS  Google Scholar 

  10. Freyer, G. A., Davey, S., Ferrer, J. V., Martin, A. M., Beach, D., and Doetsch, P. W. (1995) An alternative eukaryotic DNA excision repair pathway. Mol. Cell. Biol. 15, 4572–4577.

    PubMed  CAS  Google Scholar 

  11. Takao, M., Yonemasu, R., Yamamoto, K., and Yasui, A. (1996) Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog. Nucleic Acids Res. 24, 1267–1271.

    Article  PubMed  CAS  Google Scholar 

  12. Jaeg, J.-P., Bouayadi, K., Calsou, P., and Salles, B. (1994) UV induction of excision repair enzymes detected in protein extracts from Schizosaccharomyces pombe. Biochem. Biophys. Res. Commun. 198, 770–779.

    Article  PubMed  CAS  Google Scholar 

  13. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

    Google Scholar 

  14. Wang, Z. G., Wu, X. H., and Friedberg, E. C. (1996) A yeast whole cell extract supports nucleotide excision repair and RNA polymerase II transcription in vitro. Mutat. Res. 364, 33–41.

    PubMed  Google Scholar 

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© 1999 Humana Press Inc.

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Salles, B., Calsou, P. (1999). In Vitro Excision Repair Assay in Schizosaccharomyces pombe . In: Henderson, D.S. (eds) DNA Repair Protocols. Methods in Molecular Biology™, vol 113. Humana Press. https://doi.org/10.1385/1-59259-675-4:327

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  • DOI: https://doi.org/10.1385/1-59259-675-4:327

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-802-8

  • Online ISBN: 978-1-59259-675-1

  • eBook Packages: Springer Protocols

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