Abstract
The measurement of DNA excision repair activity in vitro, originally developed by Wood and co-workers (1), utilizes transcriptionally active protein extracts obtained from mammalian cells by the method of Manley et al. (2) (see Chapter 29). Nucleotide excision repair (NER), which requires more than 20 proteins in vitro, can process a large variety of lesions according to the following mechanism:
-
1.
Recognition of the DNA lesion.
-
2.
Incision on both sides of the lesion.
-
3.
Excision of the damaged oligonucleotide.
-
4.
DNA polymerization and ligation.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Wood, R. D., Robins, P., and Lindahl, T. (1988) Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts. Cell 53, 97–106.
Manley, J. L., Fire, A., Samuels, M. and Sharp, P. A. (1983) In vitro transcription: whole-cell extract. Methods Enzymol. 101, 568–582.
Salles, B., Frit, P., Provot, C., Jaeg, J. P., and Calsou, P. (1995) In vitro eukaryotic DNA excision repair assays: an overview. Biochimie 77, 796–802.
Calsou, P. and Salles, B. (1994) Properties of damage-dependent DNA incision by nucleotide excision repair in human cell-free extracts. Nucleic Acids Res. 22, 4937–4942.
Calsou, P. and Salles, B. (1994) Measurement of damage-specific DNA incision by nucleotide excision repair in vitro. Biochem. Biophys. Res. Commun. 202, 788–795.
Wood, R. D. (1989) Repair of pyrimidine dimer ultraviolet light photoproducts by human cell extracts. Biochemistry 28, 8287–8292.
Wang, Z., Wu, X., and Friedberg, E. C. (1992) Excision repair of DNA in nuclear extracts from the yeast Saccharomyces cerevisiae. Biochemistry 31, 3694–3702.
Wang, Z., Wu, X., and Friedberg, E. C. (1993) Nucleotide-excision repair of DNA in cell-free extracts of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 90, 4907–4911.
Bowman, K. K., Sidik, K., Smith, C. A., Taylor, J. S., Doetsch, P. W., and Freyer, G. A. (1994) A new ATP-independent DNA endonuclease from Schizosaccha-romyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts. Nucleic Acids Res. 22, 3026–3032.
Freyer, G. A., Davey, S., Ferrer, J. V., Martin, A. M., Beach, D., and Doetsch, P. W. (1995) An alternative eukaryotic DNA excision repair pathway. Mol. Cell. Biol. 15, 4572–4577.
Takao, M., Yonemasu, R., Yamamoto, K., and Yasui, A. (1996) Characterization of a UV endonuclease gene from the fission yeast Schizosaccharomyces pombe and its bacterial homolog. Nucleic Acids Res. 24, 1267–1271.
Jaeg, J.-P., Bouayadi, K., Calsou, P., and Salles, B. (1994) UV induction of excision repair enzymes detected in protein extracts from Schizosaccharomyces pombe. Biochem. Biophys. Res. Commun. 198, 770–779.
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
Wang, Z. G., Wu, X. H., and Friedberg, E. C. (1996) A yeast whole cell extract supports nucleotide excision repair and RNA polymerase II transcription in vitro. Mutat. Res. 364, 33–41.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1999 Humana Press Inc.
About this protocol
Cite this protocol
Salles, B., Calsou, P. (1999). In Vitro Excision Repair Assay in Schizosaccharomyces pombe . In: Henderson, D.S. (eds) DNA Repair Protocols. Methods in Molecular Biology™, vol 113. Humana Press. https://doi.org/10.1385/1-59259-675-4:327
Download citation
DOI: https://doi.org/10.1385/1-59259-675-4:327
Publisher Name: Humana Press
Print ISBN: 978-0-89603-802-8
Online ISBN: 978-1-59259-675-1
eBook Packages: Springer Protocols