Skip to main content

IMGT, The International ImMunoGeneTics Information System®, http://imgt.cines.fr

  • Protocol

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 248))

Abstract

The molecular synthesis and genetics of the immunoglobulin (IG) and T-cell-receptor (TR) chains are particularly complex and unique, as they include biological mechanisms such as DNA molecular rearrangements in multiple loci (three for IG and four for TR in human) located on different chromosomes (four in human), nucleotide deletions and insertions at the rearrangement junctions (or N-diversity), and somatic hypermutations in the IG loci (for review, see refs. 1,2). The number of potential protein forms of IG and TR is almost unlimited. Because of the complexity and large number of published sequences, data control and classification and detailed annotations are a very difficult task for the general databanks such as EMBL, GenBank, and DDBJ (35). These observations were the starting point of IMGT, the International ImMunoGeneTics Information System® (http://imgt.cines.fr) (6), created in 1989 by the Laboratoire ďImmunoGénétique Moléculaire (LIGM), at the Université Montpellier II, CNRS, Montpellier, France.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Lefranc, M.-P. and Lefranc, G. (2001) The Immunoglobulin FactsBook. Academic Press, London, UK, pp. 1–458.

    Google Scholar 

  2. Lefranc, M.-P. and Lefranc, G. (2001) The T cell receptor FactsBook. Academic Press, London, UK, pp. 1–398.

    Google Scholar 

  3. Stoesser, G., Baker, W., Van den Broek, A., Camon, E., Garcia-Pastor, M., Kanz, C., et al. (2001) The EMBL nucleotide sequence database. Nucleic Acids Res. 29, 17–21.

    Article  PubMed  CAS  Google Scholar 

  4. Benson, D. A., Karsch-Mizrachi, I., Lipman, D., Ostell, J., Rapp, B. A., and Wheeler, D. L. (2000) GenBank. Nucleic Acids Res. 28, 15–18.

    Article  PubMed  CAS  Google Scholar 

  5. Tateno, Y., Miyazaki, S., Ota, M., Sugawara, H., and Gojobori, T. (2000) DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Res. 28, 24–26.

    Article  PubMed  CAS  Google Scholar 

  6. Lefranc, M.-P. (2001) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 29, 207–209.

    Article  PubMed  CAS  Google Scholar 

  7. Giudicelli, V., Chaume, D., Bodmer, J., Müller, W., Busin, C., Marsh, S., et al. (1997) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 25, 206–211.

    Article  PubMed  CAS  Google Scholar 

  8. Lefranc, M.-P., Giudicelli, V., Busin, C., Bodmer, J., Müller, W., Bontrop, R., et al. (1998) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 26, 297–303.

    Article  PubMed  CAS  Google Scholar 

  9. Lefranc, M.-P., Giudicelli, V., Ginestoux, C., Bodmer, J., Müller, W., Bontrop, R., et al. (1999) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 27, 209–212.

    Article  PubMed  CAS  Google Scholar 

  10. Ruiz, M., Giudicelli, V., Ginestoux, C., Stoehr, P., Robinson, J., Bodmer, J., et al. (2000) IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 28, 219–221.

    Article  PubMed  CAS  Google Scholar 

  11. Robinson, J., Malik, A., Parham, P., Bodmer, J. G., and Marsh, S. G. E. (2000) IMGT/HLA Database — a sequence database for the human major histocompatibility complex. Tissue Antigens 55, 280–287.

    Article  PubMed  CAS  Google Scholar 

  12. Ruiz, M. and Lefranc, M.-P. (2002) IMGT gene identification and Colliers de Perles of human immunoglobulin with known 3D structures. Immunogenetics DOI 10.1007/s00251-001-0408-6. Immunogenetics 53, 857–883.

    Article  PubMed  CAS  Google Scholar 

  13. Giudicelli, V. and Lefranc, M.-P. (1999) Ontology for Immunogenetics: IMGT-ONTOLOGY. Bioinformatics 12, 1047–1054.

    Article  Google Scholar 

  14. Lefranc, M.-P. (2000) Nomenclature of the human immunoglobulin genes. Current Protocols in Immunology. J. Wiley and Sons, New York, NY, 40 (Suppl.) A.1P.1–A.1P.37.

    Google Scholar 

  15. Lefranc, M.-P. (2000) Nomenclature of the human T cell Receptor genes. Current Protocols in mmunology. J. Wiley and Sons, New York, NY, 40, (Suppl.) A.1O.1–A.1O.23.

    Google Scholar 

  16. Lefranc, M.-P. (2000) Locus maps and genomic repertoire of the human Ig genes. The Immunologist 8, 80–87.

    CAS  Google Scholar 

  17. Lefranc, M.-P. (2000) Locus maps and genomic repertoire of the human T-cell receptor genes. The Immunologist 8, 72–79.

    CAS  Google Scholar 

  18. Lefranc, M.-P. (2001) Nomenclature of the human immunoglobulin heavy (IGH) genes. Exp. Clin. Immunogenet. 18, 100–116.

    Article  PubMed  CAS  Google Scholar 

  19. Lefranc, M.-P. (2001) Nomenclature of the human immunoglobulin kappa (IGK) genes. Exp. Clin. Immunogenet. 18, 161–174.

    Article  PubMed  CAS  Google Scholar 

  20. Lefranc, M.-P. (2001) Nomenclature of the human immunoglobulin lambda (IGL) genes. Exp. Clin. Immunogenet. 18, 242–254.

    Article  PubMed  CAS  Google Scholar 

  21. Lefranc, M.-P. (1998) IMGT (ImMunoGeneTics) Locus on Focus. A new section of Experimental and Clinical Immunogenetics. Exp. Clin. Immunogenet. 15, 1–7.

    Article  PubMed  CAS  Google Scholar 

  22. Pallarès, N., Frippiat, J. P., Giudicelli, V., and Lefranc, M.-P. (1998) The human immunoglobulin lambda variable (IGLV) genes and joining (IGLJ) segments. Exp. Clin. Immunogenet. 15, 8–18.

    Article  PubMed  Google Scholar 

  23. Barbié, V. and Lefranc, M.-P. (1998) The human immunoglobulin kappa variable (IGKV) genes and joining (IGKJ) segments. Exp. Clin. Immunogenet. 15, 171–183.

    Article  PubMed  Google Scholar 

  24. Pallarès, N., Lefebvre, S., Contet, V., Matsuda, F., and Lefranc, M.-P. (1999) The human immunoglobulin heavy variable (IGHV) genes. Exp. Clin. Immunogenet. 16, 36–60.

    Article  PubMed  Google Scholar 

  25. Ruiz, M., Pallarès, N., Contet, V., Barbié, V., and Lefranc, M.-P. (1999) The human immunoglobulin heavy diversity (IGHD) and joining (IGHJ) segments. Exp. Clin. Immunogenet. 16, 173–184.

    Article  PubMed  CAS  Google Scholar 

  26. Folch, G. and Lefranc, M.-P. (2000) The human T cell receptor beta variable (TRBV) genes. Exp. Clin. Immunogenet. 17, 42–54.

    Article  PubMed  CAS  Google Scholar 

  27. Scaviner, D. and Lefranc, M.-P. (2000) The human T cell receptor alpha variable (TRAV) genes. Exp. Clin. Immunogenet. 17, 83–96.

    Article  PubMed  CAS  Google Scholar 

  28. Scaviner, D. and Lefranc, M.-P (2000) The human T cell receptor alpha joining (TRAJ) genes. Exp. Clin. Immunogenet. 17, 97–106.

    Article  PubMed  CAS  Google Scholar 

  29. Folch, G. and Lefranc, M.-P. (2000) The human T cell receptor beta diversity (TRBD) and beta joining (TRBJ) genes. Exp. Clin. Immunogenet. 17, 107–114.

    Article  PubMed  CAS  Google Scholar 

  30. Scaviner, D., Barbié, V., Ruiz, M., and Lefranc, M.-P. (1999) Protein displays of the human immunoglobulin heavy, kappa and lambda variable and joining regions. Exp. Clin. Immunogenet. 16, 234–240.

    Article  PubMed  CAS  Google Scholar 

  31. Folch, G., Scaviner, D., Contet, V., and Lefranc, M.-P. (2000) Protein displays of the human T cell receptor alpha, beta, gamma and delta variable and joining regions. Exp. Clin. Immunogenet. 17, 205–215.

    Article  PubMed  CAS  Google Scholar 

  32. Lefranc, M.-P. (1997) Unique database numbering system for immunogenetic analysis. Immuno. Today 18, 509.

    Article  CAS  Google Scholar 

  33. Lefranc, M.-P. (1999) The IMGT unique numbering for Immunoglobulins, T cell receptors and Ig-like domains. The Immunologist 7, 132–136.

    CAS  Google Scholar 

  34. Kabat, E. A., Wu, T. T., Perry, H. M., Gottesman, K. S., and Foeller, C. (1991) Sequences of proteins of immunological interest. National Institute of Health Publications, Washington, D.C., pp. 91–3242.

    Google Scholar 

  35. Satow, Y., Cohen, G. H., Padlan, E. A., and Davies, D. R. (1986) Phosphocholine binding immunoglobulin Fab McPC603. J. Mol. Biol. 190: 593–604.

    Article  PubMed  CAS  Google Scholar 

  36. Chothia, C. and Lesk, A. M. (1987) Canonical structures for the hypervariable regions of immunoglobulins. J. Mol. Biol. 196, 901–917.

    Article  PubMed  CAS  Google Scholar 

  37. Lefranc, M.-P. (2000) Web sites of interest to immunologists, in Current Protocols in Immunology, J. Wiley and Sons, New York, NY, pp. A.1J.1–A.1J.33.

    Google Scholar 

  38. Giudicelli, V., Chaume, D., and Lefranc, M.-P. (1998) IMGT/LIGM-DB: a systematized approach for ImMunoGeneTics database coherence and data distribution improvement. Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology, ISBM-98, 59–68.

    Google Scholar 

  39. Giudicelli, V., Chaume, D., Mennessier, G., Althaus, H. H., Müller, W., Bodmer, J., et al. (1998) IMGT, the international ImMunoGeneTics database: a new design for immunogenetics data access. Proceedings of the Ninth World Congress on Medical Informatics, MEDINFO’ 98 (Cesnik, B. et al., eds.), IOS Press, Amsterdam, The Netherlands, pp. 351–355.

    Google Scholar 

  40. Lefranc, M.-P. (2002) IMGT, the international ImMunoGeneTics database: a high-quality information system for comparative immmunogenetics and immunology. Dev. Comp. Immunol. 26, 697–705.

    Article  PubMed  CAS  Google Scholar 

  41. Lefranc, M.-P., Pommié, C., Ruiz, M., Giudicelli, V., Foulquier, E., Truong, L., et al. (2003) IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev. Comp. Immunol. 27, 55–77.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2004 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Lefranc, MP. (2004). IMGT, The International ImMunoGeneTics Information System®, http://imgt.cines.fr. In: Lo, B.K.C. (eds) Antibody Engineering. Methods in Molecular Biology™, vol 248. Humana Press. https://doi.org/10.1385/1-59259-666-5:27

Download citation

  • DOI: https://doi.org/10.1385/1-59259-666-5:27

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-092-2

  • Online ISBN: 978-1-59259-666-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics