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Current and Emerging Techniques for Diagnostic Mutation Detection

An Overview of Methods for Mutation Detection

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Part of the book series: Methods in Molecular Medicine™ ((MIMM,volume 92))

Abstract

This chapter provides a broad overview of the range of mutation detection techniques that are now available.

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References

  1. Vogel, F. and Motulsky, A. G. (1986) Human Genetics. Springer-Verlag, Berlin.

    Google Scholar 

  2. Taylor, G. R. (1997) Laboratory Methods for the Detection of Mutations and Polymorphisms in DNA, CRC Press, Boca Raton, FL.

    Google Scholar 

  3. Kan, Y. W. and Dozy, A. M. (1978) Antenatal diagnosis of sickle-cell anaemia by D.N.A. analysis of amniotic-fluid cells. Lancet 2, 910–912.

    CAS  PubMed  Google Scholar 

  4. Kan, Y. W., et al. (1975) Deletion of alpha-globin genes in haemoglobin-H disease demonstrates multiple alpha-globin structural loci. Nature 255, 255–256.

    Article  CAS  PubMed  Google Scholar 

  5. Mullis, K, et al. (1975) Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harbor Symp. Quant. Biol. 51, 263–273.

    Article  Google Scholar 

  6. Day, I. N. and Humphries, S. E. (1994) Electrophoresis for genotyping: microtiter array diagonal gel electrophoresis on horizontal polyacrylamide gels, hydrolink, or agarose. Anal. Biochem. 222, 389–395.

    Article  CAS  PubMed  Google Scholar 

  7. Weber, J. L. and May, P. E. (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44, 388–396.

    CAS  PubMed  Google Scholar 

  8. Nickerson, D. A., et al. (1992) Identification of clusters of biallelic polymorphic sequence-tagged sites (Pstss) that generate highly informative and automatable markers for genetic-linkage mapping. Genomics 12, 377–387.

    Article  CAS  PubMed  Google Scholar 

  9. Sachidanandam, R., et al. (2001) A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928–933.

    Article  CAS  PubMed  Google Scholar 

  10. Reich, D. E., et al. (2001) Linkage disequilibrium in the human genome. Nature 411, 199–204.

    Article  CAS  PubMed  Google Scholar 

  11. Wang, D. G., et al. (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077–1082.

    Article  CAS  PubMed  Google Scholar 

  12. Newton, C. R., et al. (1989) Analysis of any point mutation in DNA—The amplification refractory mutation system (ARMS). Nucleic Acids Res. 17, 2503–2516.

    Article  CAS  PubMed  Google Scholar 

  13. O’Dell, S. D., Gaunt, T. R., and Day, I. N. (2000) SNP genotyping by combination of 192-well MADGE, ARMS and computerized gel image analysis. Biotechniques 29, 500–506.

    Google Scholar 

  14. Krook, A., Stratton, I. M., and O’Rahilly, S. (1992) Rapid and simultaneous detection of multiple mutations by pooled and multiplex single nucleotide primer extension: application to the study of insulin-responsive glucose transporter and insulin receptor mutations in non-insulin-dependent diabetes. Hum. Mol. Genet. 1, 391–395.

    Article  CAS  PubMed  Google Scholar 

  15. Head, S. R., et al. (1997) Nested genetic bit analysis (N-GBA) for mutation detection in the p53 tumor suppressor gene. Nucleic Acids Res. 25, 5065–5071.

    Article  CAS  PubMed  Google Scholar 

  16. Sokolov, B. P. (1990) Primer extension technique for the detection of single nucleotide in genomic DNA. Nucleic Acids Res. 18, 3671.

    Article  CAS  PubMed  Google Scholar 

  17. Piggee, C. A., Muth, J., Carrilho, E., and Karger, B. L. (1997) Capillary electrophoresis for the detection of known point mutations by single-nucleotide primer extension and laser-induced fluorescence detection. J. Chromatogr. A 781, 367–375.

    Article  CAS  PubMed  Google Scholar 

  18. Parsons, B. L. and Heflich, R. H. (1998) Detection of basepair substitution mutation at a frequency of 1×10(−7) by combining two genotypic selection methods, MutEx enrichment and allele-specific competitive blocker PCR. Environ. Mol. Mutagen. 32, 200–211.

    Article  CAS  PubMed  Google Scholar 

  19. Ellis, L. A., Taylor, G. R., Banks, R., and Baumberg, S. (1994) MutS binding protects heteroduplex DNA from exonuclease digestion in-vitro—A simple method for detecting mutations. Nucleic Acids Res. 22, 2710–2711.

    Article  CAS  PubMed  Google Scholar 

  20. Pastinen, T., Partanen, J., and Syvanen, A. C. (1996) Multiplex, fluorescent, solid-phase minisequencing for efficient screening of DNA sequence variation. Clin. Chem. 42, 1391–1397.

    CAS  PubMed  Google Scholar 

  21. Syvanen, A. C. and Landegren, U. (1994) Detection of point mutations by solid-phase methods. Hum. Mutat. 3, 172–179.

    Article  CAS  PubMed  Google Scholar 

  22. Kosaki, K., et al. (2001) Fluorescence-based DHPLC for allelic quantification by single-nucleotide primer extension. J. Biochem. Biophys. Methods 47, 111–119.

    Article  CAS  PubMed  Google Scholar 

  23. Metspalu, A., et al. (1997) Arrayed primer extension (APEX) for mutation detection using gene specific DNA chips. Am. J. Hum. Genet. 61, 1301.

    Google Scholar 

  24. Buetow, K. H., et al. (2001) High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Proc. Natl. Acad. Sci. USA 98, 581–584.

    Article  CAS  PubMed  Google Scholar 

  25. Livak, K. J. (1999) Allelic discrimination using fluorogenic probes and the 5′ nuclease assay. Genetic Analysis 14, 143–149.

    Article  CAS  PubMed  Google Scholar 

  26. Tyagi, S., Bratu, D. P., and Kramer, F. R. (1998) Multicolor molecular beacons for allele discrimination. Nat. Biotechnol. 16, 49–53.

    Article  CAS  PubMed  Google Scholar 

  27. Thelwell, N., Millington, S., Solinas, A., Booth, J., and Brown, T. (2000) Mode of action and application of scorpion primers to mutation detection. Nucleic Acids Res. 28, 3752–3761.

    Article  CAS  PubMed  Google Scholar 

  28. Tong, J., Cao, W. G., and Barany, F. (1999) Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D. Nucleic Acids Res. 27, 788–794.

    Article  CAS  PubMed  Google Scholar 

  29. Pritchard, C. E. and Southern, E. M. (1997) Effects of base mismatches on joining of short oligodeoxynucleotides by DNA ligases. Nucleic Acids Res. 25, 3403–3407.

    Article  CAS  PubMed  Google Scholar 

  30. Barany, F. (1991) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc. Natl. Acad. Sci. USA 88, 189–193.

    Article  CAS  PubMed  Google Scholar 

  31. Brinson, E. C., et al. (1997) Introduction to PCR/OLA/SCS, a multiplex DNA test, and its application to cystic fibrosis [published erratum appears in Genet. Test. 1998;2(4):385]. Genet. Test. 1, 61–68.

    CAS  PubMed  Google Scholar 

  32. Samiotaki, M., Kwiatkowski, M., Parik, J., and Landegren, U. (1994) Dual-color detection of DNA sequence variants by ligase-mediated analysis. Genomics 20, 238–242.

    Article  CAS  PubMed  Google Scholar 

  33. Gasparini, P., et al. (1999) Analysis of 31 CFTR mutations by polymerase chain reaction/oligonucleotide ligation assay in a pilot screening of 4476 newborns for cystic fibrosis. J. Med. Screen. 6, 67–69.

    CAS  PubMed  Google Scholar 

  34. Zirvi, M., et al. (1999) Ligase-based detection of mononucleotide repeat sequences. Nucleic Acids Res. 27, e40.

    Article  CAS  PubMed  Google Scholar 

  35. Baner, J., Nilsson, M., Mendel-Hartvig, M., and Landegren, U. (1998) Signal amplification of padlock probes by rolling circle replication. Nucleic Acids Res. 26, 5073–5078.

    Article  CAS  PubMed  Google Scholar 

  36. Lizardi, P. M., et al. (1998) Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat. Genet. 19, 225–232.

    Article  CAS  PubMed  Google Scholar 

  37. Thomas, D. C., Nardone, G. A., and Randall, S. K. (1999) Amplification of padlock probes for DNA diagnostics by cascade rolling circle amplification or the polymerase chain reaction. Arch. Pathol. Lab Med. 123, 1170–1176.

    CAS  PubMed  Google Scholar 

  38. Ronaghi, M., Nygren, M., Lundeberg, J., and Nyren, P. (1999) Analyses of secondary structures in DNA by pyrosequencing. Anal. Biochem. 267, 65–71.

    Article  CAS  PubMed  Google Scholar 

  39. Nordstrom, T., et al. (2000) Direct analysis of single-nucleotide polymorphism on double-stranded DNA by pyrosequencing. Biotechnol. Appl. Biochem. 31, 107–112.

    Article  CAS  PubMed  Google Scholar 

  40. Garcia, C. A., et al. (2000) Mutation detection by pyrosequencing: sequencing of exons 5–8 of the p53 tumor suppressor gene. Gene 253, 249–257.

    Article  CAS  PubMed  Google Scholar 

  41. Mein, C. A., et al. (2000) Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation. Genome Res. 10, 330–343.

    Article  CAS  PubMed  Google Scholar 

  42. Ryan, D., Nuccie, B., and Arvan, D. (1999) Non-PCR-dependent detection of the factor V Leiden mutation from genomic DNA using a homogeneous invader microtiter plate assay. Molecular Diagnosis 4, 135–144.

    Article  CAS  PubMed  Google Scholar 

  43. Conner, B. J., et al. (1983) Detection of sickle cell beta S-globin allele by hybridization with synthetic oligonucleotides. Proc. Natl. Acad. Sci. USA 80, 278–282.

    Article  CAS  PubMed  Google Scholar 

  44. Heim, R. A., Sugarman, E. A., and Allitto, B. A. (2001) Improved detection of cystic fibrosis mutations in the heterogeneous U.S. population using an expanded, panethnic mutation panel. Genet. Med. 3, 168–176.

    Article  CAS  PubMed  Google Scholar 

  45. Blair, A., Bugawan, T. L., and Erlich, H. A. (1997) PCR-based DNA typing for the HLA-C locus using an immobilized oligonucleotide probe array in the line blot format. Hum. Immunol. 55, 144.

    Google Scholar 

  46. Howell, W. M., Jobs, M., Gyllensten, U., and Brookes, A. J. (1999) Dynamic allele-specific hybridization. a new method for scoring single nucleotide polymorphisms. Nat. Biotechnol. 17, 87–88.

    Article  CAS  PubMed  Google Scholar 

  47. Gotoh, M., et al. (1997) Rapid method for detection of point mutations using mismatch binding protein (MutS) and an optical biosensor. Genetic Analysis 14, 47–50.

    Article  CAS  PubMed  Google Scholar 

  48. Gotoh, M., Hasegawa, Y., Shinohara, Y., Shimizu, M., and Tosu, M. (1995) A new approach to determine the effect of mismatches on kinetic parameters in DNA hybridization using an optical biosensor. DNA Res. 2, 285–293.

    Article  CAS  PubMed  Google Scholar 

  49. Feriotto, G., et al. (2001) Biosensor technology for real-time detection of the cystic fibrosis W1282X mutation in CFTR. Hum. Mutat. 18, 70–81.

    Article  CAS  PubMed  Google Scholar 

  50. Feriotto, G., Lucci, M., Bianchi, N., Mischiati, C., and Gambari, R. (1999) Detection of the deltaF508 (F508del) tmutation of the cystic fibrosis gene by surface plasmon resonance and biosensor technology. Hum. Mutat. 13, 390–400.

    Article  CAS  PubMed  Google Scholar 

  51. Bugawan, T. L., Begovich, A. B., and Erlich, H. A. (1990) Rapid HLA-DPB typing using enzymatically amplified DNA and nonradioactive sequence-specific oligonucleotide probes. Immunogenetics 32, 231–241.

    Article  CAS  PubMed  Google Scholar 

  52. Brown, T. J. and Anthony, R. M. (2000) The addition of low numbers of 3′ thymine bases can be used to improve the hybridization signal of oligonucleotides for use within arrays on nylon supports. J. Microbiol. Methods 42, 203–207.

    Article  CAS  PubMed  Google Scholar 

  53. Lipshutz, R. J., Fodor, S. P., Gingeras, T. R., and Lockhart, D. J. (1999) High density synthetic oligonucleotide arrays. Nat. Genet. 21, 20–24.

    Article  CAS  PubMed  Google Scholar 

  54. Fodor, S. P. (1997) DNA sequencing—Massively parallel genomics. Science 277, 393.

    Article  CAS  Google Scholar 

  55. Cronin, M. T., et al. (1996) Cystic-fibrosis mutation detection by hybridization to light-generated dna-probe arrays. Hum. Mutat. 7, 244–255.

    Article  CAS  PubMed  Google Scholar 

  56. Chee, M., et al. (1996) Accessing genetic information with high-density dna arrays. Science 274, 610–614.

    Article  CAS  PubMed  Google Scholar 

  57. Hacia, J. G., Brody, L. C., Chee, M. S., Fodor, S. P., and Collins, F. S. (1996) Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis [see comments]. Nat. Genet. 14, 441–447.

    Article  CAS  PubMed  Google Scholar 

  58. Ahrendt, S. A., et al. (1999) Rapid p53 sequence analysis in primary lung cancer using an oligonucleotide probe array. Proc. Natl. Acad. Sci. USA 96, 7382–7387.

    Article  CAS  PubMed  Google Scholar 

  59. Wen, W. H., et al. (2000) Comparison of TP53 mutations identified by oligonucleotide microarray and conventional DNA sequence analysis. Cancer Res. 60, 2716–2722.

    CAS  PubMed  Google Scholar 

  60. Favis, R., et al. (2000) Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat. Biotechnol. 18, 561–564.

    Article  CAS  PubMed  Google Scholar 

  61. Ben Dor, A., Karp, R., Schwikowski, B., and Yakhini, Z. (2000) Universal DNA tag systems: a combinatorial design scheme. J. Comput. Biol. 7, 503–519.

    Google Scholar 

  62. Hirschhorn, J. N., et al. (2000) SBE-TAGS: an array-based method for efficient single-nucleotide polymorphism genotyping. Proc. Natl. Acad. Sci. USA 97, 12,164–12,169.

    Article  CAS  PubMed  Google Scholar 

  63. Fan, J. B., et al. (2000) Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays. Genome Res. 10, 853–860.

    Article  CAS  PubMed  Google Scholar 

  64. Ye, F., et al. (2001) Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum. Mutat. 17, 305–316.

    Article  CAS  PubMed  Google Scholar 

  65. Armstrong, B., Stewart, M., and Mazumder, A. (2000) Suspension arrays for high throughput, multiplexed single nucleotide polymorphism genotyping. Cytometry 40, 102–108.

    Article  CAS  PubMed  Google Scholar 

  66. Mathew, C. G., Rousseau, J., Rees, J. S., and Harley, E. H. (1983) The molecular basis of alpha thalassaemia in a South African population. Br. J. Haematol. 55, 103–111.

    Article  CAS  PubMed  Google Scholar 

  67. Borriello, F., Weinberg, D. S., and Mutter, G. L. (1994) Evaluation of gene deletions by quantitative polymerase chain-reaction—experience with the alpha-thalassemia model. Diagnostic Molecular Pathology 3, 246–254.

    Article  CAS  PubMed  Google Scholar 

  68. Kunkel, L. M. (1986) Analysis of deletions in DNA from patients with Becker and Duchenne muscular dystrophy. Nature 322, 73–77.

    Article  CAS  PubMed  Google Scholar 

  69. Puget, N., et al. (1999) Screening for germ-line rearrangements and regulatory mutations in BRCA1 led to the identification of four new deletions. Cancer Research 59, 455–461.

    CAS  PubMed  Google Scholar 

  70. Mauillon, J. L., et al. (1996) Identification of novel germline hMLH1 mutations including a 22 kb Alu-mediated deletion in patients with familial colorectal cancer. Cancer Res. 56, 5728–5733.

    CAS  PubMed  Google Scholar 

  71. Wijnen, J., et al. (1998) MSH2 genomic deletions are a frequent cause of HNPCC. Nat. Genet. 20, 326–328.

    Article  CAS  PubMed  Google Scholar 

  72. Krawczak, M. and Cooper, D. N. (1997) The Human Gene Mutation Database. Trends Genet. 13, 121–122.

    Article  CAS  PubMed  Google Scholar 

  73. CoulterMackie, M. B., Applegarth, D. A., Toone, J. R., and Gagnier, L. (1998) A protocol for detection of mitochondrial DNA deletions: Characterization of a novel deletion. Clin. Biochem. 31, 627–632.

    Article  CAS  Google Scholar 

  74. Voskova-Goldman, A., Peier, A., Caskey, C. T., Richards, C. S., and Shaffer, L. G. (1997) DMD-specific FISH probes are diagnostically useful in the detection of female carriers of DMD gene deletions. Neurology 48, 1633–1638.

    Article  CAS  PubMed  Google Scholar 

  75. Worley, K. C., et al. (1995) Rapid molecular cytogenetic analysis of x-chromosomal microdeletions—fluorescence in-situ hybridization (Fish) For complex glycerol kinase-deficiency. Am. J. Med. Genet. 57, 615–619.

    Article  CAS  PubMed  Google Scholar 

  76. Armour, J. A. L., Sismani, C., Patsalis, P. C., and Cross, G. (2000) Measurement of locus copy number by hybridisation with amplifiable probes. Nucleic Acids Res. 28, 605–609.

    Article  CAS  PubMed  Google Scholar 

  77. Bentz, M., Plesch, A., Stilgenbauer, S., Dohner, H., and Lichter, P. (1998) Minimal sizes of deletions detected by comparative genomic hybridization. Genes Chromosomes Cancer 21, 172–175.

    Article  CAS  PubMed  Google Scholar 

  78. Kraus, J., et al. (1997) High-resolution comparative hybridization to combed DNA fibers. Hum. Genet. 99, 374–380.

    Article  CAS  PubMed  Google Scholar 

  79. Pinkel, D., et al. (1998) High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat. Genet. 20, 207–211.

    Article  CAS  PubMed  Google Scholar 

  80. Pollack, J. R., et al. (1999) Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat. Genet. 23, 41–46.

    Article  CAS  PubMed  Google Scholar 

  81. Parsons, D. W., et al. (1998) Diagnosis of spinal muscular atrophy in an SMN non-deletion patient using a quantitative PCR screen and mutation analysis. J. Med. Genet. 35, 674–676.

    Article  CAS  PubMed  Google Scholar 

  82. Celi, F. S., et al. (1994) Determination of gene dosage by a quantitative adaptation of the polymerase chain-reaction (Gd-pcr)—Rapid detection of deletions and duplications of gene-sequences. Genomics 21, 304–310.

    Article  CAS  PubMed  Google Scholar 

  83. Gelfi, C., Cossu, G., Carta, P., Serra, M., and Righetti, P. G. (1995) Gene dosage in capillary electrophoresis: Pre-natal diagnosis of Down’s syndrome. J Chromatogr. 718, 405–412.

    Article  CAS  Google Scholar 

  84. Kallioniemi, O. P. (1996) Comparative genetic hybridization gaining in popularity. Trends Genet. 12, 237–238.

    Article  CAS  Google Scholar 

  85. Ligon, A. H., Kashork, C. D., Richards, C. S., and Shaffer, L. G. (2000) Identification of female carriers for Duchenne and Becker muscular dystrophies using a FISH-based approach. Eur. J. Hum. Genet. 8, 293–298.

    Article  CAS  PubMed  Google Scholar 

  86. Wolf, S., et al. (1999) Direct visual resolution of gene copy number in the human photopigment gene array. Investig. Ophthalmol. Vis. Sci. 40, 1585–1589.

    CAS  Google Scholar 

  87. Pertl, B., et al. (1999) Rapid detection of chromosome aneuploidies by quantitative fluorescence PCR: first application on 247 chorionic villus samples. J. Med. Genet. 36, 300–303.

    CAS  PubMed  Google Scholar 

  88. Yau, S. C., Bobrow, M., Mathew, C. G., and Abbs, S. J. (1996) Accurate diagnosis of carriers of deletions and duplications in Duchenne/Becker muscular dystrophy by fluorescent dosage analysis. J. Med. Genet. 33, 550–558.

    Article  CAS  PubMed  Google Scholar 

  89. Roetger, A., Brandt, B., and Barnekow, A. (1997) Competitive-differential polymerase chain reaction for gene dosage estimation of erbB-1 (egfr), erbB-2, and erbB-3 oncogenes. DNA Cell Biol. 16, 443–448.

    Article  CAS  PubMed  Google Scholar 

  90. Heid, C. A., Stevens, J., Livak, K. J., and Williams, P. M. (1996) Real time quantitative PCR. Genome Res. 6, 986–994.

    Article  CAS  PubMed  Google Scholar 

  91. Barnes, W. M. (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates. Proc. Natl. Acad. Sci. USA 91, 2216–2220.

    Article  CAS  PubMed  Google Scholar 

  92. Robertson, K. D. and Wolffe, A. P. (2000) DNA methylation in health and disease. Nat. Rev. Genet. 1, 11–19.

    Article  CAS  PubMed  Google Scholar 

  93. Clark, S. J., Harrison, J., Paul, C. L., and Frommer, M. (1994) High sensitivity mapping of methylated cytosines. Nucleic Acids Res. 22, 2990–2997.

    Article  CAS  PubMed  Google Scholar 

  94. Oakeley, E. J. (1999) DNA methylation analysis: a review of current methodologies. Pharmacol. Ther. 84, 389–400.

    Article  CAS  PubMed  Google Scholar 

  95. Bird, A. P. and Southern, E. M. (1978) Use of restriction enzymes to study eukaryotic DNA methylation: I. The methylation pattern in ribosomal DNA from Xenopus laevis. J. Mol. Biol. 118, 27–47.

    Article  CAS  PubMed  Google Scholar 

  96. Singer-Sam, J., LeBon, J. M., Tanguay, R. L., and Riggs, A. D. (1990) A quantitative HpaII-PCR assay to measure methylation of DNA from a small number of cells. Nucleic Acids Res. 18, 687.

    Article  CAS  PubMed  Google Scholar 

  97. Chotai, K. A. and Payne, S. J. (1998) A rapid, PCR based test for differential molecular diagnosis of Prader—Willi and Angelman syndromes. J. Med. Genet. 35, 472–475.

    Article  CAS  PubMed  Google Scholar 

  98. Maxam, A. M. and Gilbert, W. (1977) A new method for sequencing DNA. Proc. Natl. Acad. Sci. USA 74, 560–564.

    Article  CAS  PubMed  Google Scholar 

  99. Church, G. M. and Gilbert, W. (1984) Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991–1995.

    Article  CAS  PubMed  Google Scholar 

  100. Pfeifer, G. P., Steigerwald, S. D., Mueller, P. R., Wold, B., and Riggs, A. D. (1989) Genomic sequencing and methylation analysis by ligation mediated PCR. Science 246, 810–813.

    Article  CAS  PubMed  Google Scholar 

  101. Fritzsche, E., Hayatsu, H., Igloi, G. L., Iida, S., and Kossel, H. (1987) The use of permanganate as a sequencing reagent for identification of 5-methylcytosine residues in DNA. Nucleic Acids Res. 15, 5517–5528.

    Article  CAS  PubMed  Google Scholar 

  102. Frommer, M., et al. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89, 1827–1831.

    Article  CAS  PubMed  Google Scholar 

  103. Sadri, R. and Hornsby, P. J. (1996) Rapid analysis of DNA methylation using new restriction enzyme sites created by bisulfite modification. Nucleic Acids Res. 24, 5058–5059.

    Article  CAS  PubMed  Google Scholar 

  104. Gonzalgo, M. L. and Jones, P. A. (1997) Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res. 25, 2529–2531.

    Article  CAS  PubMed  Google Scholar 

  105. Herman, J. G., Graff, J. R., Myohanen, S., Nelkin, B. D., and Baylin, S. B. (1996) Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. USA 93, 9821–9826.

    Article  CAS  PubMed  Google Scholar 

  106. Zeschnigk, M., Lich, C., Buiting, K., Doerfler, W., and Horsthemke, B. (1997) A single-tube PCR test for the diagnosis of Angelman and Prader-Willi syndrome based on allelic methylation differences at the SNRPN locus. Eur. J. Hum. Genet. 5, 94–98.

    CAS  PubMed  Google Scholar 

  107. Muller-Tidow, C., et al. (2001) Analyses of the genomic methylation status of the human cyclin A1 promoter by a novel real-time PCR-based methodology. FEBS Lett. 490, 75–78.

    Article  CAS  PubMed  Google Scholar 

  108. Cotton, R. G. H. (1997) Slowly but surely towards better scanning for mutations. Trends Genet. 13, 43–46.

    Article  CAS  PubMed  Google Scholar 

  109. Jones, A. C., Sampson, J. R., Hoogendoorn, B., Cohen, D., and Cheadle, J. P. (2000) Application and evaluation of denaturing HPLC for molecular genetic analysis in tuberous sclerosis. Hum. Genet. 106, 663–668.

    Article  CAS  PubMed  Google Scholar 

  110. Nickerson, M. L., Warren, M. B., Zbar, B., and Schmidt, L. S. (2001) Random mutagenesis-PCR to introduce alterations into defined DNA sequences for validation of SNP and mutation detection methods. Hum. Mutat. 17, 210–219.

    Article  CAS  PubMed  Google Scholar 

  111. Arnold, N., et al. (1999) A highly sensitive, fast, and economical technique for mutation analysis in hereditary breast and ovarian cancers. Hum. Mutat. 14, 333–339.

    Article  CAS  PubMed  Google Scholar 

  112. Dobson-Stone, C., et al. (2000) Comparison of fluorescent single-strand conformation polymorphism analysis and denaturing high-performance liquid chromatography for detection of EXT1 and EXT2 mutations in hereditary multiple exostoses. Eur. J. Hum. Genet. 8, 24–32.

    Article  CAS  PubMed  Google Scholar 

  113. Klein, W., et al. (2000) The IL-10 gene is not involved in the predisposition to inflammatory bowel disease. Electrophoresis 21, 3578–3582.

    Article  CAS  PubMed  Google Scholar 

  114. Mir, K. U. and Southern, E. M. (1999) Determining the influence of structure on hybridization using oligonucleotide arrays. Nat. Biotechnol. 17, 788–792.

    Article  CAS  PubMed  Google Scholar 

  115. Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K., and Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86, 2766–2770.

    Article  CAS  PubMed  Google Scholar 

  116. Ravnik-Glavac, M., Glavac, D., and Dean, M. (1994) Sensitivity of single-strand conformation polymorphism and heteroduplex method for mutation detection in the cystic fibrosis gene. Hum. Mol. Genet. 3, 801–807.

    Article  CAS  PubMed  Google Scholar 

  117. Vidal-Puig, A. and Moller, D. E. (1994) Comparative sensitivity of alternative single-strand conformation polymorphism (SSCP) methods. Biotechniques 17, 490–492, 494, 496.

    CAS  PubMed  Google Scholar 

  118. Sheffield, V. C., et al. (1993) The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions. Genomics 16, 325–332.

    Article  CAS  PubMed  Google Scholar 

  119. Hayashi, K. and Yandell, D. W. (1993) How sensitive is PCR-SSCP? Hum. Mutat. 2, 338–346.

    Article  CAS  PubMed  Google Scholar 

  120. Ellison, J. S. (1996) Fluorescence-based mutation detection. Single-strand conformation polymorphism analysis (F-SSCP). Mol. Biotechnol. 5, 17–31.

    Article  CAS  PubMed  Google Scholar 

  121. Larsen, L., Christiansen, M., Vuust, J., and Andersen, P. S. (1999) High-throughput single-tranded conformation polymorphism analysis by automated capillary electrophoresis: Robust multiplex analysis and pattern based identification of allelic variants. Hum. Mutat. 13, 318–327.

    Article  CAS  PubMed  Google Scholar 

  122. Ellis, L. A., Taylor, C. F., and Taylor, G. R. (2000) A Comparison of Fluorescent SSCP and Denaturing HPLC for High Throughput Mutation Scanning. Hum. Mutat. 15, 556–564.

    Article  CAS  PubMed  Google Scholar 

  123. Liu, Q., Feng, J., and Sommer, S. S. (1996) Bi-directional dideoxy fingerprinting (Bi-ddF): a rapid method for quantitative detection of mutations in genomic regions of 300–600 bp. Hum. Mol. Genet. 5, 107–114.

    Article  CAS  PubMed  Google Scholar 

  124. Larsen, L. A., et al. (2001) Automated mutation screening using dideoxy fingerprinting and capillary array electrophoresis. Hum. Mutat. 18, 451–457.

    Article  CAS  PubMed  Google Scholar 

  125. Nagamine, C. M., Chan, K., and Lau, Y. F. (1989) A PCR artifact: generation of heteroduplexes. Am. J. Hum. Genet. 45, 337–339.

    CAS  PubMed  Google Scholar 

  126. White, M. B., Carvalho, M., Derse, D., O’Brien, S. J., and Dean, M. (1992) Detecting single base substitutions as heteroduplex polymorphisms. Genomics 12, 301–306.

    Article  CAS  PubMed  Google Scholar 

  127. Boyd, M., Lanyon, W. G., and Connor, J. M. (1993) Screening for molecular pathologies in Lesch-Nyhan syndrome. Hum. Mutat. 2, 127–130.

    Article  CAS  PubMed  Google Scholar 

  128. Spritz, R. A. and Holmes, S. A. (1993) Polymerase chain reaction detection of a novel human KIT (mast/stem cell growth factor receptor) gene polymorphism by single-strand conformation polymorphism analysis or by SmaI or BstNI cleavage. Hum. Genet. 92, 208–209.

    Article  CAS  PubMed  Google Scholar 

  129. Ganguly, A., Rock, M. J., and Prockop, D. J. (1993) Conformation-sensitive gel electrophoresis for rapid detection of single-base differences in double-stranded PCR products and DNA fragments: evidence for solvent-induced bends in DNA heteroduplexes. Proc. Natl. Acad. Sci. USA 90, 10,325–10,329.

    Article  CAS  PubMed  Google Scholar 

  130. Korkko, J., Annunen, S., Pihlajamaa, T., Prockop, D. J., and Ala-Kokko, L. (1998) Conformation sensitive gel electrophoresis for simple and accurate detection of mutations: Comparison with denaturing gradient gel electrophoresis and nucleotide sequencing. Proc. Natl. Acad. Sci. USA 95, 1681–1685.

    Article  CAS  PubMed  Google Scholar 

  131. Ganguly, T., Dhulipala, R., Godmilow, L., and Ganguly, A. (1998) High throughput fluorescence-based conformation-sensitive gel electrophoresis (F-CSGE) identifies six unique BRCA2 mutations and an overall low incidence of BRCA2 mutations in high-risk BRCA1-negative breast cancer families. Hum. Genet. 102, 549–556.

    Article  CAS  PubMed  Google Scholar 

  132. Edwards, S. M., Kote-Jarai, Z., Hamoudi, R., and Eeles, R. A. (2001) An improved high throughput heteroduplex mutation detection system for screening BRCA2 mutations-fluorescent mutation detection (F-MD). Hum. Mutat. 17, 220–232.

    Article  CAS  PubMed  Google Scholar 

  133. Rozycka, M., Collins, N., Stratton, M. R., and Wooster, R. (2000) Rapid detection of DNA sequence variants by conformation-sensitive capillary electrophoresis. Genomics 70, 34–40.

    Article  CAS  PubMed  Google Scholar 

  134. Fischer, S. G. and Lerman, L. S. (1983) DNA fragments differing by single base-pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc. Natl. Acad. Sci. USA 80, 1579–1583.

    Article  CAS  PubMed  Google Scholar 

  135. Myers, R. M., Fischer, S. G., Maniatis, T., and Lerman, L. S. (1985) Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA-sequence as determined by denaturing gradient gel-electrophoresis. Nucleic Acids Res. 13, 3111–3129.

    Article  CAS  PubMed  Google Scholar 

  136. Gejman, P. V., Cao, Q., Guedj, F., and Sommer, S. (1998) The sensitivity of denaturing gradient gel electrophoresis: a blinded analysis. Mutat. Res. 382, 109–114.

    Article  CAS  PubMed  Google Scholar 

  137. Henco, K., Harders, J., Wiese, U., and Riesner, D. (1994) Temperature gradient gel electrophoresis (TGGE) for the detection of polymorphic DNA and RNA. Methods Mol. Biol. 31, 211–228.

    CAS  PubMed  Google Scholar 

  138. Hovig, E., Smith-Sorensen, B., Brogger, A., and Borrensen, A. L. (1991) Constant denaturant gel electrophoresis, a modification of denaturing gradient gel electrophoresis, in mutation detection. Mutat. Res. 263, 61.

    Article  CAS  PubMed  Google Scholar 

  139. Khrapko, K., et al. (1994) Constant denaturant capillary electrophoresis (CDCE): a high resolution approach to mutational analysis. Nucleic Acids Res. 22, 364–369.

    Article  CAS  PubMed  Google Scholar 

  140. Gao, Q. F. and Yeung, E. S. (2000) High-throughput detection of unknown mutations by using multiplexed capillary electrophoresis with poly(vinylpyrrolidone) solution. Analyt. Chem. 72, 2499–2506.

    Article  CAS  Google Scholar 

  141. Underhill, P. A., Jin, L., Zemans, R., Oefner, P. J., and Cavalli-Sforza, L. L. (1996) A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history. Proc. Natl. Acad. Sci. USA 93, 196–200.

    Article  CAS  PubMed  Google Scholar 

  142. Jones, A. C., et al. (1999) Optimal temperature selection for mutation detection by denaturing HPLC and comparison to single-stranded conformation polymorphism and heteroduplex analysis. Clin. Chem. 45, 1133–1140.

    CAS  PubMed  Google Scholar 

  143. O’Donovan, M. C., et al. (1998) Blind analysis of denaturing high-performance liquid chromatography as a tool for mutation detection. Genomics 52, 44–49.

    Article  Google Scholar 

  144. Liu, W. G., Smith, D. I., Rechtzigel, K. J., Thibodeau, S. N., and James, C. D. (1998) Denaturing high performance liquid chromatography (DHPLC) used in the detection of germline and somatic mutations. Nucleic Acids Res. 26, 1396–1400.

    Article  CAS  PubMed  Google Scholar 

  145. Hecker, K. H., Taylor, P. D., and Gjerde, D. T. (1999) Mutation detection by denaturing DNA chromatography using fluorescently labeled polymerase chain reaction products. Anal. Biochem. 272, 156–164.

    Article  CAS  PubMed  Google Scholar 

  146. Novack, D. F., Casna, N. J., Fischer, S. G., and Ford, J. P. (1986) Detection of single base-pair mismatches in dna by chemical modification followed by electrophoresis in 15-percent polyacrylamide-gel. Proc. Natl. Acad. Sci. USA 83, 586–590.

    Article  CAS  PubMed  Google Scholar 

  147. Ganguly, A. and Prockop, D. J. (1990) Detection of single-base mutations by reaction of DNA heteroduplexes with a water-soluble carbodiimide followed by primer extension: application to products from the polymerase chain reaction. Nucleic Acids Res. 18, 3933–3939.

    Article  CAS  PubMed  Google Scholar 

  148. Cotton, R. G. H., Rodrigues, N. R., and Campbell, R. D. (1988) Reactivity of cytosine and thymine in single base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations. Proc. Natl. Acad. Sci. USA 85, 4397–4401.

    Article  CAS  PubMed  Google Scholar 

  149. Condie, A., et al. (1993) Detection of point mutations in the P53 gene—comparison of single-strand conformation polymorphism, constant denaturant gel-electrophoresis, and hydroxylamine and osmium-tetroxide techniques. Hum. Mutat. 2, 58–66.

    Article  CAS  PubMed  Google Scholar 

  150. Forrest, S. M., Dahl, H. H., Howells, D. W., Dianzani, I., and Cotton, R. G (1991) Mutation detection in phenylketonuria by using chemical cleavage of mismatch: importance of using probes from both normal and patient samples. Am. J. Hum. Genet. 49, 175–183.

    CAS  PubMed  Google Scholar 

  151. Hull, J., Shackleton, S., and Harris, A. (1994) Analysis of mutations and alternative splicing patterns in the CFTR gene using mRNA derived from nasal epithelial cells. Hum. Mol. Genet. 3, 1141–1146.

    Article  CAS  PubMed  Google Scholar 

  152. Verpy, E., Biasotto, M., Meo, T., and Tosi, M. (1994) Efficient detection of point mutations on color-coded strands of target DNA. Proc. Natl. Acad. Sci. USA 91, 1873–1877.

    Article  CAS  PubMed  Google Scholar 

  153. Rowley, G., Saad, S., Gianelli, F., and Green, P. M. (1995) Ultrarapid mutation detection by multiplex, solid-phase chemical cleavage. Genomics 30, 574–582.

    Article  CAS  PubMed  Google Scholar 

  154. Hansen, L. L., Justesen, J., and Kruse, T. A. (1996) Sensitive and fast mutation detection by solid phase chemical cleavage. Hum. Mutat. 7, 256–263.

    Article  CAS  PubMed  Google Scholar 

  155. Roberts, E., Deeble, V. J., Woods, C. G., and Taylor, G. R. (1997) Potassium permanganate and tetraethylammonium chloride are a safe and effective substitute for osmium tetroxide in solid-phase fluorescent chemical cleavage of mismatch. Nucleic Acids Res. 25, 3377–3378.

    Article  CAS  PubMed  Google Scholar 

  156. Solaro, P. C., Birkenkamp, K., Pfeiffer, P., and Kemper, B. (1993) Endo-nuclease VII of phage T4 triggers mismatch correction in vitro. J. Mol. Biol. 230, 868–877.

    Article  CAS  PubMed  Google Scholar 

  157. Youil, R., Kemper, B. W., and Cotton, R. G. H. (1995) Screening for mutations by enzyme mismatch cleavage with T4 endonuclease-7. Proc. Natl. Acad. Sci. USA 92, 87–91.

    Article  CAS  PubMed  Google Scholar 

  158. Giunta, C., et al. (1996) Rapid diagnosis of germline p53 mutation using the enzyme mismatch cleavage method. Diagnostic Molecular Pathology 5, 265–270.

    Article  CAS  PubMed  Google Scholar 

  159. Mashal, R. D., Koontz, J., and Sklar, J. (1995) Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases. Nat. Genet. 9, 177–183.

    Article  CAS  PubMed  Google Scholar 

  160. DelTito, B. J., et al. (1998) Automated fluorescent analysis procedure for enzymatic mutation detection. Clin. Chem. 44, 731–739.

    CAS  Google Scholar 

  161. Otway, R., Tetlow, N., Hornby, J., and Kohonen-Corish, M. (2000) Evaluation of enzymatic mutation detectiontrade mark in hereditary nonpolyposis colorectal cancer. Hum. Mutat. 16, 61–67.

    Article  CAS  PubMed  Google Scholar 

  162. Oleykowski, C. A., Bronson, M. C., Godwin, A. K., and Yeung, A. T. (1998) Mutation detection using a novel plant endonuclease. Nucleic Acids Res. 26, 4597–4602.

    Article  CAS  PubMed  Google Scholar 

  163. Kulinski, J., Besack, D., Oleykowski, C. A., Godwin, A. K., and Yeung, A. T. (2000) CEL I enzymatic mutation detection assay. Biotechniques 29, 44–46, 48.

    CAS  PubMed  Google Scholar 

  164. Colbert, T., et al. High-throughput screening for induced point mutations. Plant Physiol. 126, 480–484.

    Google Scholar 

  165. Huang, J., Lu, J., Barany, F., and Cao, W. (2001) Multiple cleavage activities of endonuclease V from Thermotoga maritima: recognition and strand nicking mechanism. Biochemistry 40, 8738–8748.

    Article  CAS  PubMed  Google Scholar 

  166. Myers, R. M., Larin, Z., and Maniatis, T. (1985) Detection of single base substitutions by ribonuclease cleavage at mismatches in RNA-DNA duplexes. Science 230, 1242–1246.

    Article  CAS  PubMed  Google Scholar 

  167. Winter, E., Yamamoto, F., Almoguera, C., and Perucho, M. (1985) A method to detect and characterize point mutations in transcribed genes—amplification and overexpression of the mutant c-ki-ras allele in human tumor cells. Proc. Natl. Acad. Sci. USA 82, 7575–7579.

    Article  CAS  PubMed  Google Scholar 

  168. Lopez-Galindez, C., et al. (1988) Analysis of genetic variability and mapping of point mutations in influenza virus by the RNase A mismatch cleavage method. Proc. Natl. Acad. Sci. USA 85, 3522–3526.

    Article  CAS  PubMed  Google Scholar 

  169. Miki, Y., et al. (1992) Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res. 52, 643–645.

    CAS  PubMed  Google Scholar 

  170. Goldrick, M. M., et al. (1996) NIRCA™—A rapid robust method for screening for unknown point mutations. Biotechniques 21, 106–112.

    CAS  PubMed  Google Scholar 

  171. Prescott, J., (1999) Cleavage of double-stranded copy RNA by RNase 1 and RNase T1 provides a robust means to detect p53 gene mutations in clinical specimens. 20, 1149–1161.

    CAS  Google Scholar 

  172. Faudoa, R., Xue, Z., Lee, F., Baser, M. E., and Hung, G. (2000) Detection of novel NF2 mutations by an RNA mismatch cleavage method. Hum. Mutat. 15, 474–478.

    Article  CAS  PubMed  Google Scholar 

  173. Hawkins, G. A. and Hoffman, L. M. (1997) Mutation detection and DNA fingerprinting at single nucleotide resolution using base excision sequence scanning (BESS). Clin. Chem. 43, 23.

    Google Scholar 

  174. Hawkins, G. A. and Hoffman, L. M. (1999) Rapid DNA mutation identification and fingerprinting using base excision sequence scanning. Electrophoresis 20, 1171–1176.

    Article  CAS  PubMed  Google Scholar 

  175. Brow, M. A., et al. (1996) Differentiation of bacterial 16S rRNA genes and intergenic regions and Mycobacterium tuberculosis katG genes by structure-specific endonuclease cleavage. J. Clin. Microbiol. 34, 3129–3137.

    CAS  PubMed  Google Scholar 

  176. Marshall, D. J., et al. (1997) Determination of hepatitis C virus genotypes in the United States by Cleavase Fragment Length Polymorphism analysis. J. Clin. Microbiol. 35, 3156–3162.

    CAS  PubMed  Google Scholar 

  177. Rossetti, S., Englisch, S., Bresin, E., Pignatti, P. F., and Turco, A. E. (1997) Detection of mutations in human genes by a new rapid method: cleavage fragment length polymorphism analysis (CFLPA). Molecular and Cellular Probes 11, 155–160.

    Article  CAS  PubMed  Google Scholar 

  178. Jiricny, J., Su, S. S., Wood, S. G., and Modrich, P. (1988) Mismatch-containing oligonucleotide duplexes bound by the escherichia-coli muts-encoded protein. Nucleic Acids Res. 16, 7843–7853.

    Article  CAS  PubMed  Google Scholar 

  179. Lishanski, A., Ostrander, E. A., and Rine, J. (1994) Mutation detection by mismatch binding-protein, MUTS, in amplified DNA—application to the cystic-fibrosis gene. Proc. Natl. Acad. Sci. USA 91, 2674–2678.

    Article  CAS  PubMed  Google Scholar 

  180. Wagner, R., Debbie, P., and Radman, M. (1995) Mutation detection using immobilized mismatch binding-protein (MUTS). Nucleic Acids Res. 23, 3944–3948.

    Article  CAS  PubMed  Google Scholar 

  181. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463–5467.

    Article  CAS  PubMed  Google Scholar 

  182. Parinov, S., et al. (1996) DNA sequencing by hybridization to microchip octa-and decanucleotides extended by stacked pentanucleotides. Nucleic Acids Res. 24, 2998–3004.

    Article  CAS  PubMed  Google Scholar 

  183. Lander, E. S., et al. (2001) Initial sequencing and analysis of the human genome. Nature 409, 860–921.

    Article  CAS  PubMed  Google Scholar 

  184. Nickerson, D. A., Tobe, V. O., and Taylor, S. L. (1997) PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res. 25, 2745–2751.

    Article  CAS  PubMed  Google Scholar 

  185. Duddy, P. M., Hanby, A. M., Barnes, D. M., and Camplejohn, R. S. (2000) Improving the detection of p53 mutations in breast cancer by use of the FASAY, a functional assay. J. Mol. Diagn. 2, 139–144.

    Article  CAS  PubMed  Google Scholar 

  186. Bonfield, J. K., Rada, C., and Staden, R. (1998) Automated detection of point mutations using fluorescent sequence trace subtraction. Nucleic Acids Res. 26, 3404–3409.

    Article  CAS  PubMed  Google Scholar 

  187. Mattocks, C., Tarpey, P., Bobrow, M., and Whittaker, J. (2000) Comparative sequence analysis (CSA): a new sequence-based method for the identification and characterization of mutations in DNA. Hum. Mutat. 16, 437–443.

    Article  CAS  PubMed  Google Scholar 

  188. Hattori, M., Shibata, A., Yoshioka, K., and Sakaki, Y (1993) Orphan peak analysis: a novel method for detection of point mutations using an automated fluorescence DNA sequencer. Genomics 15, 415–417.

    Article  CAS  PubMed  Google Scholar 

  189. Fu, D. J., et al. (1998) Sequencing exons 5 to 8 of the p53 gene by MALDI-TOF mass spectrometry. Nat. Biotechnol. 16, 381–384.

    Article  CAS  PubMed  Google Scholar 

  190. Ginot, F. (1997) Oligonucleotide micro-arrays for identification of unknown mutations: how far from reality? Hum. Mutat. 10, 1–10.

    Article  CAS  PubMed  Google Scholar 

  191. Kozal, M. J., et al. (1996) Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nat. Med. 2, 753–759.

    Article  CAS  PubMed  Google Scholar 

  192. Wikman, F. P., et al. (2000) Evaluation of the performance of a p53 sequencing microarray chip using 140 previously sequenced bladder tumor samples. Clin. Chem. 46, 1555–1561.

    CAS  PubMed  Google Scholar 

  193. Roest, P. A., Roberts, R. G., Sugino, S., van Ommen, G. J., and Den Dunnen, J. T. (1993) Protein truncation test (PTT) for rapid detection of translation-terminating mutations. Hum. Mol. Genet. 2, 1719–1721.

    Article  CAS  PubMed  Google Scholar 

  194. Powell, S. M., et al. (1993) Molecular diagnosis of familial adenomatous polyposis. N. Engl. J. Med. 329, 1982–1987.

    Article  CAS  PubMed  Google Scholar 

  195. Den Dunnen, J. T. and van Ommen, G. J. (1999) The protein truncation test: A review. Hum. Mutat. 14, 95–102.

    Article  Google Scholar 

  196. Ishioka, C., et al. (1997) Detection of heterozygous truncating mutations in the BRCA1 and APC genes by using a rapid screening assay in yeast. Proc. Natl. Acad. Sci. USA 94, 2449–2453.

    Article  CAS  PubMed  Google Scholar 

  197. Flaman, J. M., et al. (1995) A simple p53 functional assay for screening cell lines, blood, and tumors. Proc. Natl. Acad. Sci. USA 92, 3963–3967.

    Article  CAS  PubMed  Google Scholar 

  198. Kruger, W. D. and Cox, D. R. (1995) A yeast assay for functional detection of mutations in the human cystathionine beta-synthase gene. Hum. Mol. Genet. 4, 1155–1161.

    Article  CAS  PubMed  Google Scholar 

  199. Schwartz, H., Alvares, C. P., White, M. B., and Fields, S. (1998) Mutation detection by a two-hybrid assay. Hum. Mol. Genet. 7, 1029–1032.

    Article  CAS  PubMed  Google Scholar 

  200. Bougeard, G., et al. (2001) Detection of 11 germline inactivating TP53 mutations and absence of TP63 and HCHK2 mutations in 17 French families with Li-Fraumeni or Li-Fraumeni-like syndrome. J. Med. Genet. 38, 253–257.

    Article  CAS  PubMed  Google Scholar 

  201. Davies, R. C., Bratt, E., and Hastie, N. D. (2000) Did nucleotides or amino acids drive evolutionary conservation of the WT1 +/−KTS alternative splice? Hum. Mol. Genet. 9, 1177–1183.

    Article  CAS  PubMed  Google Scholar 

  202. Xue, G., Pang, H. M., and Yeung, E. S. (2001) On-line nanoliter cycle sequencing reaction with capillary zone electrophoresis purification for DNA sequencing. J. Chromatogr. A 914, 245–256.

    Article  CAS  PubMed  Google Scholar 

  203. Dunnen, J. T. and Antonarakis, S. E. (2000) Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum. Mutat. 15, 7–12.

    Article  Google Scholar 

  204. Beutler, E., McKusick, V. A., Motulsky, A. G., Scriver, C. R., and Hutchinson, F. (1996) Mutation nomenclature: nicknames, systematic names, and unique identifiers. Hum. Mutat. 8, 203–206.

    Article  CAS  PubMed  Google Scholar 

  205. Auerbach, A. D. (2000) 8th International HUGO-Mutation Database Initiative Meeting, April 9, 2000, Vancouver, Canada. Hum. Mutat. 16, 265–268.

    Article  CAS  PubMed  Google Scholar 

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Taylor, C.F., Taylor, G.R. (2004). Current and Emerging Techniques for Diagnostic Mutation Detection. In: Elles, R., Mountford, R. (eds) Molecular Diagnosis of Genetic Diseases. Methods in Molecular Medicine™, vol 92. Humana Press, Totowa, NJ. https://doi.org/10.1385/1-59259-432-8:9

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