Abstract
In this chapter, we describe the use of plasmid vectors in transcription and translation systems in vitro to investigate aspects of the biology of the gene and the protein for which it codes. An in vitro, or cell-free, assay reproduces a relatively complex physiological process by mixing the essential purified components of the system under controlled conditions outside of the cell. Such systems allow the basic steps of transcription and translation to be studied individually, and the products obtained at each step to be altered in different ways according to the needs of the research. Thus, an in vitro system is convenient when it is necessary to modify a product, for example, by introducing mutations, labels, tags, or fusions.
References
Arnstein, H. R. V and Cox, R. A. (1992) Protein Biosynthesis: In Focus, Oxford University Press, Oxford.
Grunberg-Manago, M. (1999) Messenger RNA stability and its role in the control of gene expression in bacteria and phages. Annu. Rev. Genetics 33, 193–227.
Weissmann, C., Billeter, N. A., Goodman, H. M., et al. (1973) Structure and function of phage RNA. Annu. Rev. Biochem. 42, 303–308.
Zengel, J. M. and Lindahl, L. (1992) Ribosomal protein L4 and transcription factor NusA have separable roles in mediating termination of transcription within the leader region of the S10 operon of E. coli. Genes Dev. 6, 655–662.
Zengel, J. M., and Lindahl, L. (1993) Domain I of 23S rRNA competes with a paused transcription complex for ribosomal protein L4 of E. coli. Nucleic Acids Res. 21, 2429–2435.
Zengel, J. M., Mueckl, D., and Lindahl, L. (1980) Protein L4 of the E. coli ribosome regulates an eleven gene r-protein operon. Cell 21, 523–525.
Shine, J. and Dalgarno, L. (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. USA 71, 1342–1346.
Noren, C. J., Anthony-Cahill, S. J., Griffith, M. C., et al. (1989) A general method for site-specific incorporation of unnatural amino acids into proteins. Science 244, 182–188.
Zubay, G. (1980) The isolation and properties of CAP, the catabolite gene activator. Methods Enzymol. 65, 856–877.
Lesley, S. A., Brow, M. A. D., and Burgess, R. R. (1991) Use of in vitro protein synthesis from polymerase chain reaction generated templates to study interaction of Escherichia coli transcription factors with core RNA polymerase and for epitope mapping of monoclonal anitbodies. J. Biol. Chem. 266, 2632–2638.
Jackson, R. I. and Hunt, T. (1983) Preparation and use of nuclease-treated lysates for the translation of eukaryotic messenger RNA. Methods Enzymol. 96, 50–74.
Darnbrough, C., Legon, S., Hunt, T., et al. (1973) Initiation of protein synthesis: evidence for messenger RNA-independent binding of methionyl-transfer RNA to the 40 S ribosomal subunit. J. Mol. Biol. 76, 379–403.
Pelham, H. R. and Jackson, R. J. (1976) An efficient mRNA-dependent translation system from reticulocyte lysates. Eur. J. Biochem. 67, 247–256.
Walter, P. and Blobel, G. (1983) Preparation of microsomal membranes for cotranslational protein translocation. Methods Enzymol. 96, 84–93.
Erickson, A. H. and Blobel, G. (1983) Cell-free translation of messenger RNA in a wheat germ system. Methods Enzymol. 96, 38–50.
Spirin, A. S., Boranov, V. I., Ryabova, L. A., et al. (1988) A continuous cell-free translation system capable of producing polypeptides in high yield. Science 242, 1162–1164.
Boranov, V. I. and Spirin, A. S. (1993) Gene expression in cell-free system on preparative scale. Methods Enzymol. 217, 123–142.
Schenborn, E. T. and Nierendorf R. C. (1985) A novel transcription property of SP6 and T7 RNA polymerases: Dependence on template structure. Nucleic Acids. Res. 13, 6223–6236.
Movahedzadeh, H., Gonzalez-y-Merchand, J. A., and Cox, R. A. (2001) Transcription start site mapping, in Mycobacterium tuberculosis Protocols: Methods in Molecular Medicine, (Parish, T. and Stoker, N. G., eds.), Humana, Totowa, NJ, vol. 54, pp. 105–124.
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Movahedzadeh, F., Rico, S.G., Cox, R.A. (2003). In Vitro Transcription and Translation. In: Casali, N., Preston, A. (eds) E. coli Plasmid Vectors. Methods in Molecular Biology™, vol 235. Humana Press. https://doi.org/10.1385/1-59259-409-3:247
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DOI: https://doi.org/10.1385/1-59259-409-3:247
Publisher Name: Humana Press
Print ISBN: 978-1-58829-151-6
Online ISBN: 978-1-59259-409-2
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