Abstract
The use of quantitative polymerase chain reaction (qPCR) to detect RNA viruses has become increasingly important as a prognostic marker and in patient management, for example, in human immunodeficiency virus (HIV) and hepatitis C virus (HCV) infection. Drug therapies can be monitored by regularly checking viral load, indicating whether the regime is sufficient, or whether alternatives should be sought. It is therefore crucial that the systems used are ultrasensitive and give accurate and reproducible results.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Clementi, M., Menzo, S., Bagnarelli, P., Manzin, A., Valenza, A., and Varaldo, P. E. (1993) Quantitative PCR and RT-PCR in virology. PCR Methods Appl. 2, 191–196.
Zhang, L. Q., Simmonds, P., Ludlam, C. A., and Leigh Brown, A. J. (1991) Detection, quantification and sequencing of HIV-1 from plasma of seropositive individuals and from factor VIII concentrates. AIDS 5, 675–681.
Kaneko, S., Murakami, S., Unoura, M., and Kobayashi, K. (1992) Quantitation of hepatitis C virus by competitive polymerase chain reaction. J. Med. Virol. 37, 278–282.
Whitby, K. and Garson, J. A. (1995) Optomisation and evaluation of a quantitative chemiluminescent polymerase chain reaction assay for hepatitis C virus RNA. J. Virol. Methods. 51, 75–88.
Hawkins, A., Davidson, F., and Simmonds, P. (1997) Comparison of plasma virus loads among individuals infected with hepatitis C virus (HCV) genotypes 1, 2, and 3 by Quantiplex HCV RNA Assay versions 1 and 2, Roche Monitor Assay and an in-house limiting dilution method. J. Clin. Microbiol. 35, 187–192.
Lauwers, S., Bissay, V., and Rombaut, B. (1997) Development of an enterovirus specific PCR method for the quantification of enterovirus genomes in blood of diabetes patients. Clin. Diagn. Virol. 9, 135–139.
Whitby, K. and Garson, J. A. (1997) A single tube two compartment reverse transcription polymerase chain reaction system for ultrasensitive quantitative detection of hepatitis C virus RNA. J. Virol. Methods 66, 15–18.
Kashanchi, F., Melpolder, J. C., Epstein, J. S., and Sadaie, M. R. (1997) Rapid and sensitive detection of cell-associated HIV-1 in latently infected cell lines and in patient cells using sodium-n-butyrate induction and RT-PCR. J. Med. Virol. 52, 179–189.
Liuzzi, G., Chirianni, A., Clementi, M., Bagnarelli, P., Valenza, A., Cataldo, P. T., et al. (1996) Analysis of HIV-1 load in blood, semen and saliva: Evidence for different viral compartments in a cross-sectional and longitudinal study. AIDS 10, F51–F56.
Mayerat, C., Burgisser, P., Lavanchy, D., Mantegani, A., and Frei, P. C. (1996) Comparison of a competitive combined reverse transcription PCR assay with a branched-DNA assay for hepatitis C virus. J. Clin. Microbiol. 34, 2702–2706.
Gilliland, G., Perrin, S., Blanchard, K., and Bunn, H. K. (1990) Analysis of cytokine mRNA and DNA: Detection and quantitation by competitive polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87, 2725–2729.
Higuchi, R., Krummel, B., and Saiki, R. K. (1988) A general method of in-vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. Nucleic Acids Res. 16, 7351–7367.
Vallette, F., Mege, E., Reiss, A., and Adesnik, M. (1989) Construction of mutant and chimeric genes using the polymerase chain reaction. Nucleic Acids Res. 17, 723–733.
Simmonds, P., Zhang, L. Q., Watson, H. G., Rebus, S., Ferguson, E. D., Balfe, P., et al. (1990) Hepatitis C quantification and sequencing in blood products, haemophiliacs, and drug users. Lancet 336, 1469–1472.
van Kerckhoven, I., Fransen, K., Peeters, M., de Beenhouwer, H., Piot, P., and van der Groen, G. (1994) Quantification of human immunodeficiency virus in plasma by RNA PCR, viral culture, and p24 antigen. J. Clin. Microbiol. 32, 1669–1673.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2003 Humana Press Inc.
About this protocol
Cite this protocol
McDonagh, S. (2003). Ultrasensitive Quantitative PCR to Detect RNA Viruses. In: Bartlett, J.M.S., Stirling, D. (eds) PCR Protocols. Methods in Molecular Biology™, vol 226. Humana Press. https://doi.org/10.1385/1-59259-384-4:197
Download citation
DOI: https://doi.org/10.1385/1-59259-384-4:197
Publisher Name: Humana Press
Print ISBN: 978-0-89603-642-0
Online ISBN: 978-1-59259-384-2
eBook Packages: Springer Protocols