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Denaturing Gradient Gel Electrophoresis (DGGE) for Mutation Detection in Duchenne Muscular Dystrophy (DMD)

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Neurogenetics

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 217))

Abstract

Duchenne muscular dystrophy (DMD) is an X-linked recessive neuromuscular disorder caused by mutations in the dystrophin gene at Xp21. Approximately two-thirds of the mutations are intragenic deletions of one or more of the 79 exons that constitute the 2.4 Mb dystrophin gene, 5 % are duplications, and the remaining 30% are mutations that are very difficult to identify by current diagnostic screening strategies (13). The great majority of deletions can be detected by polymerase chain reaction (PCR) multiplex approach (4,5) or Southern blot analysis probed with dystrophin cDNA (1).

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References

  1. Koenig, M., Hoffman, E. P., Bertelson, C. J., Monaco, A. P., and Kunkel, L. M. (1987) Complete cloning of the Duchenne muscular dystrophy (DMD) cDNA and preliminary genomic organization of the DMD gene in normal and affected individuals. Cell 50, 509–517.

    Article  PubMed  CAS  Google Scholar 

  2. Den Dunnen, J. T., Grootscholten, P. M., Bakker, E., Blonden, L. A. J., Ginjaar, H. B., Wapenaar, M.C., et al. (1989) Topography of the Duchenne muscular dystrophy (DMD) gene: FIGE and cDNA analysis of 194 cases reveals 115 deletions and 13 duplications. Am. J. Hum. Genet. 45, 835–847.

    PubMed  CAS  Google Scholar 

  3. Hu, X., Ray, P. N., Murphy, E. G., Thompson, M.W., and Worton, R. G. (1990) Duplicational mutation at the Duchenne muscular dystrophy locus: its frequency, distribution, origin and phenotype genotype correlation. Am. J. Hum. Genet. 46, 682–695.

    PubMed  CAS  Google Scholar 

  4. Chamberlain, J. S., Gibbs, R. A., Ranier, J. E., Nguyen, P. N., and Caskey, C. T. (1988) Deletion screening of the Duchenne muscular dystrophy locus multiplex DNA amplification. Nucleic Acids Res. 16, 11,141–11,156.

    Article  PubMed  CAS  Google Scholar 

  5. Beggs, A. H., Koenig, M., Boyce, F. M., and Kunkel, L.M. (1990) Detection of 98% of DMD/BMD gene deletions by polymerase chain reaction. Hum. Genet. 86, 45–48.

    Article  PubMed  CAS  Google Scholar 

  6. Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K., and Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphism. Proc. Natl. Acad. Sci. USA 86, 2766–2770.

    Article  PubMed  CAS  Google Scholar 

  7. Cotton, R. G. H. (1989) Detection of single base changes in nucleic acids. Biochem. J. 263, 1–10.

    PubMed  CAS  Google Scholar 

  8. Soto, D. M. and Sukumar, S. (1992) Improved detection of mutations in the p 53 gene in human tumors as single-strand conformation polymorphisms and double-strand heteroduplex DNA PCR. Methods Appl. 2, 96–98.

    CAS  Google Scholar 

  9. White, M. B., Carvalho, M., Derse, D., O’Brien, S. J., and Dean, M. (1992) Detecting single base substitutions as heteroduplex polymorphisms. Genomics 12, 301–306.

    Article  PubMed  CAS  Google Scholar 

  10. Mendell, J. R., Buzin, C. H., Feng, J., Yan, J., Serrano, C., Sangani, D. S., et al. (2001). Diagnosis of Duchenne dystrophy by enhanced detection of small mutations. Neurology 57, 645–650.

    PubMed  CAS  Google Scholar 

  11. Fischer, S. G. and Lerman, L. S. (1979). Lenght-independent separation of DNA restriction fragments in two-dimensional gel electrophoresis. Cell 16, 191–200.

    Article  PubMed  CAS  Google Scholar 

  12. Fischer, S.G. and Lerman, L.S. (1983). DNA fragments differing by a single base-pair substitution are separated in denaturing gradient gels: correspondence with melting theory. Proc. Natl. Acad. Sci. USA 80, 1579–1583.

    Article  PubMed  CAS  Google Scholar 

  13. Myers, R. M., Fischer, S. G., Lerman, L. S. and Maniatis, T. (1985). Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res. 13, 3131–3145.

    Article  PubMed  CAS  Google Scholar 

  14. Myers, R. M., Maniatis, T., and Lerman, L.S. (1987). Detection and localization of single base changes by denaturing gradient gel electrophoresis, in Methods in Enzymology, vol. 155. (Wu, R., ed.), Academic Press, New York; pp. 501–527.

    Google Scholar 

  15. Lerman, L. S. and Silverstain, K. (1987). Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis, in Methods in Enzymology, vol. 155. (Wu, R., ed.), Academic Press, New York; pp. 482–501.

    Google Scholar 

  16. Hofstra, R. W. M. and den Dunnen, J. T. Personal communication. (see Website http:// www.dmd.nl/dgge.html)

  17. Dolinsky, L. C. B., Moura-Neto, R. S., and Falcão-Conceição, D. N. (2000) DGGE scan as a tool to look for new mutants and carriers of the DMD gene. Am. J. Hum. Genet. 67 (Suppl), 4.

    Google Scholar 

  18. Miller, S. A., Dykes, D. D., and Polesky, H. F. (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16, 1215.

    Article  PubMed  CAS  Google Scholar 

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Dolinsky, L.C.B. (2003). Denaturing Gradient Gel Electrophoresis (DGGE) for Mutation Detection in Duchenne Muscular Dystrophy (DMD). In: Potter, N.T. (eds) Neurogenetics. Methods in Molecular Biology™, vol 217. Springer, Totowa, NJ. https://doi.org/10.1385/1-59259-330-5:165

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  • DOI: https://doi.org/10.1385/1-59259-330-5:165

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-990-2

  • Online ISBN: 978-1-59259-330-9

  • eBook Packages: Springer Protocols

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