Abstract
Subtractive hybridization techniques are designed to deplete one cDNA population (the “target”) of sequences common to a second group of cDNAs (the “driver”), thereby effectively enriching the target population for unique sequences. The applications of this powerful methodology are widespread, and have included identification of genes expressed during embryonic development as well as genes expressed solely in specialized regions of the brain (1-5).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Casal, J. and Leptin, M. (1996) Identification of novel genes in Drosophila reveals the complex regulation of early gene activity in the mesoderm. Proc. Natl. Acad. Sci. USA 93, 10,327–10,332.
Gautvik, K. M., de Lecea, L., Gautvik, V. T., Danielson, P. E., Tranque, P., Dopazo, A., Bloom, F. E., and Sutcliffe, J. G. (1996) Overview of the most prevalent hypothalamus-specific mRNAs, as identified by directional tag PCR subtraction. Proc. Natl. Acad. Sci. USA 93, 8733–8738.
Saga, Y., Hata, N., Kobayashi, S., Magnuson, T., Seldin, M. F., and Taketo, M. M. (1996) MesP1: a novel basic helix-loop-helix protein expressed in the nascent mesodermal cells during mouse gastrulation. Development 122, 2769–2778.
Tranque, P., Crossin, K. L., Cirelli, C., Edelman, G. M., and Mauro, V. P. (1996) Identification and characterization of a RING zinc finger gene (C-RZF) expressed in chicken embryo cells. Proc. Natl. Acad. Sci. USA 93, 3105–3109.
Usui, H., Falk, J. D., Dopazo, A., de Lecea, L., Erlander, M. G., and Sutcliffe, J. G. (1994) Isolation of clones of rat striatum-specific mRNAs by directional tag PCR subtraction. J. Neurosci. 14, 4915–4926.
Fidock, D. A., Nguyen, T. V., Ribeiro, J.M., Valenzuela, J. G., and James, A. A. (2000) Subtractive hybridization of Plasmodium falciparum: construction and validation of a cDNA library enriched in sporozoite-specific transcripts. Exp. Parasitol. 95, 220–225.
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
Dugaiczyk, A., Boyer, H. W., and Goodman, H. M. (1975) Ligation of EcoRI endonuclease-gener-ated DNA fragments into linear and circular structures. J. Mol. Biol. 96, 171–184.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2002 Humana Press Inc.
About this protocol
Cite this protocol
Fidock, D.A., Nguyen, T.V., Beerntsen, B.T., James, A.A. (2002). Production of Stage-Specific Plasmodium falciparum cDNA Libraries Using Subtractive Hybridization. In: Doolan, D.L. (eds) Malaria Methods and Protocols. Methods in Molecular Medicine™, vol 72. Humana Press. https://doi.org/10.1385/1-59259-271-6:277
Download citation
DOI: https://doi.org/10.1385/1-59259-271-6:277
Publisher Name: Humana Press
Print ISBN: 978-0-89603-823-3
Online ISBN: 978-1-59259-271-5
eBook Packages: Springer Protocols