Abstract
Flavoenzymes are redox proteins that catalyze a wide diversity of biological reactions ranging from O2 activation, to aromatic hydroxylations, dehydrogenations, and reactions in which they can accept or donate one or two electrons. In addition, they can fulfill structural and regulatory roles. This diversity is due to the fine tuning of the reactivity of the isoalloxazine ring of the flavin coenzyme by specific interactions with the protein moiety on the particular enzyme it complexes with. Methods to provide specific information on these interactions have relied on three approaches:
-
1.
Determination of the three-dimensional structure of the flavoenzyme by X-ray diffraction techniques.
-
2.
Spectroscopic probes of the protein influence on flavin structure by techniques such as nuclear magnetic resonance (NMR), resonance Raman, fluorescence, electron paramagnetic resonance (EPR), and circular dichroism (CD) spectroscopies.
-
3.
Replacement of the native flavin coenzyme with suitable flavin analogues designed to ask specific questions regarding the reactivity, the accessibility, and the mode of specific interactions with the protein.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Spencer, R., Fisher, J., and Walsh, C. (1976) Preparation, characterization, and chemical properties of the flavin coenzyme analogues 5-deazariboflavin, 5-deazariboflavin 5′-phosphate, and 5-deazariboflavin 5′-diphosphate, 5′ leads to 5′-adenosine ester. Biochemistry 15, 1043–1053.
Kim, J., Fuller, J. H., Kuusk, V., Cunane, L., Chen, Z., Mathews, F. S., and McIntire, W. S. (1995) The cytochrome subunit is necessary for covalent FAD attachment to the flavoprotein subunit of P-cresol methylhydroxylase. J. Biol. Chem. 270, 31,202–31,209.
Miller, J. R. and Edmondson, D. E. (1997) Effect of flavin structure on the enzymatic activity of recombinant human liver monoamine oxidase A, in Flavins and Flavoproteins (Stevenson, K., Massey, V., and Williams, Jr., C. H., eds.), University of Calgary Press, Calgary, Alberta, Canada, pp. 71–75.
Engst, S., Vock, P., Wang, M., Kim, J. J., and Ghisla, S. (1998). On the mechanism of activation of Acyl-CoA substrates by medium chain Acyl-CoA dehydrogenase: interaction of the thioester carbonyl with the FAD ribityl side-chain. Biochemistry, in press.
Muller, F. and Hemmerich, P. (1966) Thiones, imines, oximes and azines of riboflavin. Nucleophilic substitution reactions in the flavin nucleus. Studies in the flavin series. X. Helv. Chim. Acta 49, 2352–2364.
Lambooy, J. P. (1971) Analogs of riboflavin. Meth. Enzymol. 18, 437–447.
Lambooy, J. P. (1967) The alloxazines and isoalloxazines, in Heterocyclic Compounds (Elderfield, R. C., ed.), vol. 9, 2, Wiley, New York.
Hausinger, R. P., Honek, J. K., and Walsh, C. (1986) Enzymol. 122, 199–220.
Tsibris, J. C. M., McCormick, D. B., and Wright, L. D. (1966) Studies on the binding and function of flavin phosphates with flavin mononucleotide-dependent enzymes J. Biol. Chem. 241, 1138–1143.
Chassy, B. M. and McCormick, D. B. (1965) Coenzyme specificity of D-amino acid oxidase from the flavin moiety of FAD. Biochim. Biophys. Acta 110, 91–96.
Muller, F. and Hemmerich, P. (1966) Thione, imine, oxime und azine des riboflavins. Nucleophile substitutionsreaktionen am flavinkern. Helv. Chim. Acta 49, 2352–2364.
Claiborne, A., Hemmerich, P., Massey, V., and Lawton, R. (1983) Reaction of 2-thio-FAD-reconstituted p-hydroxybenzoate hydroxylase with hydrogen peroxide. Formation of a covalent flavin-protein linkage. J. Biol. Chem. 258, 5433–5439.
Biemann, M., Claiborne, A., Ghisla, S., and Massey, V. (1984) 4-Thioflavins as active site probes of flavoproteins. Reactions with sulfite. J. Biol. Chem. 259, 13,355–13,362.
Schopfer, L. M., Massey, V., and Claiborne, (1981) Active site probes of flavoproteins. Determination of the solvent accessibility of the flavin position 8 for a series of flavoproteins. J. Biol. Chem. 256, 7329–7337.
Muller, F., Mayhew, S. G., and Massey, V. (1973) On the effect of temperature on the absorption spectra of free and protein-bound flavins. Biochemistry 12, 4654–4662.
Gadda, G., Wels, G., Ambrosius, D., Pilone, M. S., and Ghisla, S. (1997) Characterization of cholesterol oxidase from Streptomyces hygroscopicus and Brevibacterium sterolicum. Eur. J. Biochem. 250, 360–376.
Massey, V., Ghisla, S., and Moore, D. G. (1979) 8-Mercapto-flavins as active site probes of flavin enzymes. J. Biol. Chem. 254, 9640–9650.
Ghisla, S. and Mayhew, S. G. (1976) Identification and properties of 8-hydroxyflavin adenine dinucleotide in electron-transferring flavoprotein from Peptostreptococcus elsdenii. Eur. J. Biochem. 63, 373–390.
Ghisla, S. and Massey, V. (1991) L-Lactate oxidase, in Chemistry and Biochemistry of Flavoenzymes (Muller, F., ed.), vol. II, CRC Press, Boca Raton, FL, pp. 243–289.
Schultz, G. E., Schirmer, F. H., and Pai, E. F. (1982) FAD-binding site of glutathione reductase. J. Mol. Biol. 160, 287–308.
Hemmerich, P., Massey, V., Michel, H., and Schug, C. (1982) Scope and limitation of single electron transfer in biology. Structure Bonding 48, 93–123.
Eberlein, G. and Bruice, T. C. (1982) One-and two-electron reduction of oxygen by 1,5-dihydroflavins. J. Am. Chem. Soc. 104, 1449–1452.
Edmondson, D. E., Barman, B., and Tollin, G. (1972) On the importance of the N-5 position in flavin coenzymes. Properties of free and protein-bound 5-deaza analogs. Biochemistry 11, 1133–1137.
Ghisla, S., Thorpe, C., and Massey, V. (1984) Mechanistic studies with general acyl-CoA dehydrogenase and butyryl-CoA-dehydrogenase, evidence for the transfer of the β-hydrogen as a Hydride. Biochemistry 23, 3154–3161.
Hersh, L. B. and Jorns, M. S. (1975) Use of 5-deazaFAD to study hydrogen transfer in the d-amino acid oxidase reaction. J. Biol. Chem. 250, 8728–8734.
Fisher, J., Spencer, R., and Walsh, C. (1976) Enzyme-catalyzed redox reactions with the flavin analogues 5-deazariboflavin, 5-deazariboflavin 5′-phosphate, and 5-deazariboflavin 5′-diphosphate, 5′ leads to 5′-adenosine ester. Biochemistry 15, 1054–1064.
Averill, B. A., Schonbrunn, A., Abeles, R. H., Weinstock, L. T., Cheng, C. C., Fisher, J., Spencer, R., and Walsh, C. (1975) Studies on the mechanism of Mycobacterium smegmatis L-lactate oxidase. 5-Deazaflavin mononucleotide as a coenzyme analogue. J. Biol. Chem. 250, 1603–1605.
Balme, A. and Lederer, F. (1993) Reconstitution of flavin-free flavocytochrome b2 with 5-deazaFMN: a carbanion or a hydride mechanism?, in Flavins and Flavoproteins (Yagi, K., ed.), W. DeGruyter & Co., Berlin, pp. 629–637.
Pollegioni, L., Blodig, W., and Ghisla, S. (1997) On the mechanism of D-amino acid oxidase: structure linear free energy correlations and deuterium kinetic isotope effects using substituted phenylglycines. J. Biol. Chem. 272, 4924–4934.
Yorita, K., Sanko, K., Aki, K., Ghisla, S., Palfrey, B. A., and Massey, V. (1997) On the reaction mechanism of L-lactate oxidase: quantitative structure-activity analysis of the reaction with para-substituted L-mandelates. Proc. Natl. Acad. Sci. USA 94, 9590–9595.
Mattevi, A., Vanoni, M. A., Todone, F., Teplyakov, A., Coda, A., Bolognesi, M., and Curti, B. (1997) Crystal structure of D-amino acid oxidase: a case of active site mirror-image convergent evolution with flavocytochrome, Proc. Natl. Acad. Sci. USA 93, 7496–7501.
Ghisla, S. and Massey, V. (1986) New flavins for old: artificial flavins as active site probes of flavoproteins. Biochem. J. 239, 1–12.
Manstein, D. J., Pai, E. F., Schopfer, L. M., and Massey, V. (1986) Absolute stereochemistry of flavins in enzyme-catalyzed reactions. Biochemistry 25, 6807–6816.
Tittmann, K., Proske, D., Spinka, M., Ghisla, G., Rudolph, R. G. H., and Kern, G. (1998) Activation of thiamin diphosphate and FAD in the phosphate dependent pyruvate oxidase from lactobacillus plantarum. J. Biol. Chem. 273, 12,929–12,934.
Kurfurst, M., Macheroux, P., Ghisla, S., and Hastings, J. W. (1989) Bioluminescence emission of bacterial luciferase with 1-deaza-FMN: evidence for the nonin-volvement of N(1)-protonated flavin species as emitters. Eur. J. Biochem. 181, 453–457.
Eckstein, J. W., Hastings, J. W., and Ghisla, S. (1993) Mechanism of bacterial bioluminescence: 4a,5-dihydroflavin analogs as models for luciferase hydroperoxide intermediates and the effect of substituents at the 8 position of flavin on luciferase kinetics. Biochemistry 32, 404–411.
Ortiz-Meldonado, M., Ballou, D. P., and Massey, V. (1997) Leaving group tendencies of 8-substituted flavin-C4a-alkoxides and the mechanism of hydroxylation catalyzed by p-hydroxybenzoate hydroxylase, in Flavins and Flavoproteins (Stevenson, K., Massey, V., and Williams, Jr., C. H., eds.) University of Calgary Press, Calgary, Alberta, Canada, pp. 323–326.
Bruice, T. C., Noar, J. B., Ball, S. S., and Venkataram, U. V. (1983) The monooxygen donation potential of 4a-hydroperoxy flavins as compared with percarboxylic acid and other hydroperoxides. Monooxygen donation to olefin, tertiary amine, alkyl sulfide, and iodide ion. J. Am. Chem. Soc. 105, 2452–2462.
Blankenhorn, G. (1976) Nicotinamide-dependent one-electron and two-electron (flavin) oxidoreduction: thermodynamics, kinetics, and mechanism. Eur. J. Biochem. 67, 67–80.
Streitwieser, Jr., A. (1966) Molecular Orbital Theory for Organic Chemists, Wiley, New York.
Draper, R. D. and Ingraham, L. L. (1968) A potentiometric study of the flavin semiquinone equilibrium. Arch. Biochem. Biophys. 125, 802–808.
Massey, V., Claiborne, A., Biemann, M., and Ghisla, S. (1984) 4-Thioflavins as active site probes of flavoproteins: general properties. J. Biol. Chem. 259, 9667–9678.
Claiborne, A., Massey, V., Fitzpatrick, P. F., and Schopfer, L. M. (1982) 2-Thioflavins as active site probes of flavoproteins. J. Biol. Chem. 257, 174–182.
Spencer, R., Fisher, J., and Walsh, C. (1977) Reconstitution of flavin enzymes with 1-carba-1-deazaflavin coenzyme analogues. Biochemistry 16, 3594–3602.
Fenner, H., Grauert, R., Hemmerich, P., Michel, H., and Massey, V. (1979) 5-Thia-5-deazaflavin, a 1e-transferring flavin analog. Eur. J. Biochem. 95, 183–191.
Nielsen, P., Bacher, A., Darling, D., and Cushman, M. (1983) Synthesis and biological evaluation of 7α,α,α,8α,α,α-hexafluororiboflavin and 7α,α,α,8α,α,α-hexafluoro-FMN. Z. Naturforsch. 38c, 701–707.
Massey, V. and Nishino, T. (1980) d-Amino acid oxidase containing 7,8-dichloro-FAD instead of FAD, in Flavins and Flavoproteins (Yagi, K., and Yamano, T., eds.), University Park Press, Baltimore, MD, pp. 1–11.
Moore, E., Ghisla, S., and Massey, V. (1979) Properties of flavins where the 8-methyl group is replaced by mercapto residues. J. Biol. Chem. 254, 8173–8178.
Thorpe, C. and Massey, V. (1980) Flavin analogue studies of pig kidney general acyl-CoA dehydrogenase. Biochemistry 22, 2972–2978.
Light, D. R. and Walsh, C. (1980) Flavin analogs as mechanistic probes of adrenodoxin reductase-dependent electron transfer to the cholesterol side chain cleavage cytochrome P-450 of the adrenal cortex. J. Biol. Chem. 255, 4264–4277.
Massey, V. (1981) A simple method for the determination of redox potentials, in Flavins and Flavoproteins (Curti, B., Ronchi, S., and Zanetti, G., eds.), W. DeGruyter & Co., Berlin, pp. 59–66.
Walsh, C., Fisher, J., Spencer, R., Graham, D. W., Ashton, W. T., Brown, J., Brown, R. D., and Rogers, E. F. (1978) Chemical and enzymatic properties of riboflavin analogues. Biochemistry 17, 1942–1951.
Murthy, Y. U. and Massey, V. (1998) Synthesis and properties of 8-CN-flavin nucleotide analogs and studies with flavoproteins. J. Biol. Chem. 272, 8975–8982.
Edmondson, D. E. (1974) Intramolecular hemiacetal formation in 8-formylribo-flavine. Biochemistry 13, 2817–2821.
Edmondson, D. E. and Singer, T. P. (1973) Oxidation-reduction properties of the 8 α-substituted flavins., J. Biol. Chem. 248, 8144–8149.
Hansch, C. and Leo, H. (1979) Substituent Constants for Correlation Analysis in Chemistry and Biology, Wiley, New York.
Macheroux, P., Eckstein, J., and Ghisla, S. (1987) Studies on the mechanism of bacterial bioluminescence. Evidence compatible with a one electron transfer process and a CIEEL mechanism in the luciferase reaction, in Flavins and Flavoproteins (McCormick, D. B. and Edmondson, D. E., eds.), DeGruyter, Berlin, pp. 613–619.
Hasford, J. J. and Rizzo, C. J. (1998) Linear free energy substituent effect on flavin redox chemistry. J. Am. Chem. Soc. 120, in press.
Hille, R., Fee, J. A., and Massey, V. (1981) Equilibrium properties of xanthine oxidase containing FAD analogs of varying oxidation-reduction potential. J. Biol. Chem. 256, 8933–8940.
Stewart, R. C. and Massey, V. (1985) Potentiometric studies of native and flavin-substituted Old Yellow Enzyme. J. Biol. Chem. 260, 13,639–13,647.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1999 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Edmondson, D., Ghisla, S. (1999). Flavoenzyme Structure and Function. In: Chapman, S.K., Reid, G.A. (eds) Flavoprotein Protocols. Methods in Molecular Biology, vol 131. Humana Press. https://doi.org/10.1385/1-59259-266-X:157
Download citation
DOI: https://doi.org/10.1385/1-59259-266-X:157
Publisher Name: Humana Press
Print ISBN: 978-0-89603-734-2
Online ISBN: 978-1-59259-266-1
eBook Packages: Springer Protocols