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Integral Glycan Sequencing of Heparan Sulfate and Heparin Saccharides

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Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 171))

Abstract

The functions of heparan sulfate (HS) are determined by specific saccharide motifs within HS chains. These sequences confer selective protein-binding properties and the ability to modulate protein bioactivities (1,2). HS chains consist of an alternating disaccharide repeat of glucosamine (GlcN; N-acetylated or N-sulfated) and uronic acid (glucuronic [GlcA] or iduronic acid [IdoA]). The initial biosynthetic product containing N-acetylglucosamine (GlcNAc) and GlcA is modified by N-sulfation of the GlcN, ester (O)-sulfation (at positions 3 and 6 on the GlcN and at position 2 on the uronic acids) and by epimerization of GlcA to IdoA. The extent of these modifications is incomplete, and their degree and distribution varies in HS between different cell types. In HS chains, N- and O-sulfated sugars are predominantly clustered in sequences of up to 8 disaccharides separated by N-acetyl-rich regions with a low sulfate content (3).

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References

  1. Spillmann, D. and Lindahl, U. (1994) Gycosaminoglycan-protein interactions: a question of specificity. Curr. Opin. Cell Biol. 4, 677–682.

    CAS  Google Scholar 

  2. Bernfield M., Gotte, M., Park, P. W., et al. Functions of Cell Surface Heparan Sulfate Proteoglycans. Ann. Rev. Biochem. (1999) 68, 729–777.

    Article  PubMed  CAS  Google Scholar 

  3. Turnbull, J. E. and Gallagher, J. T. (1991) Distribution of Iduronate-2-sulfate residues in HS: evidence for an ordered polymeric structure. Biochem. J. 273, 553–559.

    PubMed  CAS  Google Scholar 

  4. Turnbull, J. E., Fernig, D., Ke, Y., Wilkinson, M. C., and Gallagher, J. T. (1992) Identification of the basic FGF binding sequence in fibroblastHS. J. Biol. Chem. 267, 10,337–10,341.

    PubMed  CAS  Google Scholar 

  5. Pervin, A., Gallo, C., Jandik, K., Han, X., and Linhardt, R., (1995) Preparation and structural characterisation of heparin-derived oligosaccharides. Glycobiology 5, 83–95.

    Article  PubMed  CAS  Google Scholar 

  6. Yamada, S., Yamane, Y., Tsude, H., Yoshida, K., and Sugahara, K. (1998) A major common trisulfated hexasaccharide isolated from the low sulfated irregular region of porcine intestinal heparin. J. Biol. Chem., 273, 1863–1871.

    Article  PubMed  CAS  Google Scholar 

  7. Yamada, S., Yoshida, K., Sugiura, M., Sugahara, K., Khoo, K., Morris, H., and Dell, A. (1993) Structural studies on the bacterial lyase-resistant tetrasaccharides derived from the antithrom-bin binding site of porcine mucosal intestinal heparin. J. Biol. Chem. 268, 4780–4787.

    PubMed  CAS  Google Scholar 

  8. Mallis, L., Wang, H., Loganathan, D., and Linhardt, R. (1989) Sequence analysis of highly sulfated heparin-derived oligosaccharides using FAB-MS. Anal. Chem. 61, 1453–1458.

    Article  PubMed  CAS  Google Scholar 

  9. Rhomberg A. J., Ernst, S., Sasisekharan, R., Biemann, K., et al. (1998) Mass spectromet-ric and capillary electrophoretic investigation of the enzymatic degradation of heparin-like glycosaminoglycans. Proc. Natl. Acad. Sci. (USA) 95, 4176–4181.

    Article  CAS  Google Scholar 

  10. Hopwood, J. (1989) Enzymes that degrade heparin and heparan sulfate. In: Heparin (Lane and Lindahl, eds.), Edward Arnold, London, UK, pp. 191–227.

    Google Scholar 

  11. Turnbull, J. E., Hopwood, J. J., and Gallagher, J. T. (1999) A strategy for rapid sequencing of heparan sulfate/heparin saccharides. Proc. Natl. Acad. Sci. (USA) 96, 2698–2703.

    Article  CAS  Google Scholar 

  12. Merry, C. L. R., Lyon, M., Deakin, J. A., Hopwood, J. J., and Gallagher, J. T. (1999) Highly sensitive sequencing of the sulfated domains of heparan sulfate. J. Biol. Chem. 274, 18,455–18,462.

    Article  PubMed  CAS  Google Scholar 

  13. Vives, R. R., Pye, D. A., Samivirta, M., Hopwood, J. J., Lindahl, U., and Gallagher, J. T. (1999) Sequence analysis of heparan sulphate and heparin oligosaccharides. Biochem. J. 339, 767–773.

    Article  PubMed  CAS  Google Scholar 

  14. Venkataraman, G., Shriver, Z., Raman, R., Sasisekharan, R., et al. (1999) Sequencing complex polysaccharides. Science 286, 537–542.

    Article  PubMed  CAS  Google Scholar 

  15. Guimond, S. E. and Turnbull, J. E. (1999) Fibroblast growth factor receptor signalling is dictated by specific heparan sulfate saccharides. Curr. Biol. 9, 1343–1346.

    Article  PubMed  CAS  Google Scholar 

  16. Shively, J. and Conrad, H. (1976) Formation of anhydrosugars in the chemical depolymerisation of heparin. Biochemistry 15, 3932–3942.

    Article  PubMed  CAS  Google Scholar 

  17. Bienkowski, M. J. and Conrad, H. E. (1985) Structural characterisation of the oligosaccha-rides formed by depolymerisation of heparin with nitrous acid. J. Biol. Chem. 260, 356–365.

    PubMed  CAS  Google Scholar 

  18. Turnbull, J. E. and Gallagher, J. T. (1988) Oligosaccharide mapping of heparan sulfate by polyacrylamide-gradient-gel electrophoresis and electrotransfer to nylon membrane. Biochem.J. 251, 597–608.

    PubMed  CAS  Google Scholar 

  19. Rice, K., Rottink, M., and Linhardt, R. (1987) Fractionation of heparin-derived oligosaccha-rides by gradient PAGE. Biochem. J. 244, 515–522.

    PubMed  CAS  Google Scholar 

  20. Ludwigs, U., Elgavish, A., Esko, J., and Roden, L. (1987) Reaction of unsaturated uronic acid residues with mercuric salts. Biochem. J. 245, 795–804.

    PubMed  CAS  Google Scholar 

  21. Drummond, K. J., Yates, E. A., and Turnbull. J. E. (2001) Electrophoretic sequencing of heparin/heparin sulfate oligosaccharides using a highly sensitive fluorescent end label. Proteomics (in press).

    Google Scholar 

  22. Lee, K. B., Al-Hakim, A., Loganathan, D., and Linhardt, R. J. (1991) A new method for sequencing linear oligosaccharides on gels using charged fluorescent conjugates. Carbohydr.Res. (1991) 214, 155–168

    Article  PubMed  CAS  Google Scholar 

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© 2001 Humana Press Inc., Totowa, NJ

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Turnbull, J.E. (2001). Integral Glycan Sequencing of Heparan Sulfate and Heparin Saccharides. In: Iozzo, R.V. (eds) Proteoglycan Protocols. Methods in Molecular Biology™, vol 171. Humana Press. https://doi.org/10.1385/1-59259-209-0:129

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  • DOI: https://doi.org/10.1385/1-59259-209-0:129

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-759-5

  • Online ISBN: 978-1-59259-209-8

  • eBook Packages: Springer Protocols

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