Abstract
It was believed that only proteins could carry out enzymatic reactions, and only nucleic acids could mediate inheritance. In recent years, the work of Cech and Altman and others has shown that nucleic acids can catalyze reactions. Now it has been shown that, in yeast, proteins can mediate inheritance. The infectious protein (prion) concept arose from studies of the transmissible spongiform encephalopathies (TSEs) of mammals (1), and several lines of evidence suggest that TSEs are indeed caused by infectious forms of the PrP protein, but the absence of definitive proof has left substantial doubt and disagreement on this point (2–6). The ease of genetic manipulation of yeast offers experimental possibilities not yet available even in the mouse system. This enabled the discovery of yeast prions (7), and has facilitated the rapid characterization of these systems. The parallels between the yeast and mammalian systems are striking. Moreover, because both of the yeast prion systems appear to involve self-propagating amyloid forms of the respective proteins, these systems may also serve as models for the broader class of diseases for which amyloid accumulation is a central feature. The discovery of the [HET-s] prion of the filamentous fungus Podospora, another genetically manipulable system, adds a new dimension to prion studies (8).
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References
Griffith, J. S. (1967) Self-replication and scrapie. Nature 215, 1043–1044
Chesebro, B. (1998) BSE and prions: uncertainties about the agent. Science 279, 42–43
Farquhar, C. F., Somerville, R. A., and Bruce, M. E. (1998) Straining the prion hypothesis. Nature 391, 345–346
Prusiner, S. B. (1998) Prions. Proc. Natl. Acad. Sci. USA. 95, 13,363–13,383
Manson, J. C., Jamieson, E., Baybutt, H., Tuzi, N. L., Barron, R., McConnell, I., et al. (1999) Single amino acid alteration (101L) introduced into murine PrP dramatically alters incubation time of transmissible spongiform encephalopathy. EMBO J. 18, 6855–6864
Weissmann, C. (1999) Molecular genetics of transmissible spongiform encephalopathies. J. Biol. Chem. 274, 3–6
Wickner, R. B. (1994) Evidence for a prion analog in S. cerevisiae: the (URE3) nonMendelian genetic element as an altered URE2 protein. Science 264, 566–569
Coustou, V., Deleu, C., Saupe, S., and Begueret, J. (1997) Protein product of the het-s heterokaryon incompatibility gene of the fungus Podospora anserina behaves as a prion analog. Proc. Natl. Acad. Sci. USA 94, 9773–9778
Wickner, R. B., Masison, D. C., and Edskes, H. K. (1995) [PSI] and [URE3] as yeast prions. Yeast 11, 1671–1685
Lindquist, S. (1997) Mad cows meet psi-chotic yeast: the expansion of the prion hypothesis. Cell 89, 495–498
Kushnirov, V. V. and Ter-Avanesyan, M. D. (1998) Structure and replication of yeast prions. Cell 94, 13–16
Liebman, S. W. and Derkatch, I. L. (1999) The yeast [PSI+] prion: making sense out of nonsense. J. Biol. Chem. 274, 1181–1184
Wickner, R. B. and Chernoff, Y. (1999) Prions of yeast and fungi: [URE3], [PSI] and [Het-s] discovered as heritable traits, in Prions (Prusiner, S. B. ed.), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 229–272
Westaway, D., DeArmond, S. J., Cayetano-Canlas, J., Groth, D., Foster, D., Yang, S.-L., et al. (1994) Degeneration of skeletal muscle, peripheral nerves, and the central nervous system in transgenic mice overexpressing wild-type prion proteins. Cell 76, 117–129
Bueler, H., Aguzzi, A., Sailer, A., Greiner, R.-A., Autenried, P., Aguet, M., et al. (1993) Mice devoid of PrP are resistant to Scrapie. Cell 73, 1339–1347
Bueler, H., Fischer, M., Lang, Y., Bluethmann, H., Lipp, H. P., DeArmond, S. J., et al. 1992. Normal development and behavior of mice lacking the neuronal cellsurface PrP protein. Nature 356, 577–582
Cooper, T. G. (1982) Nitrogen metabolism in Saccharomyces cerevisiae, in The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, vol. 2 (Strathern, J. N., Jones, E. W., and Broach, J. R. eds.), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 39–99
Magasanik, B. (1992) Regulation of nitrogen utilization, in The Molecular Biology of the Yeast Saccharomyces: Metabolism and Gene Expression, vol. 2 (Strathern, J. N., Jones, E. W., and Broach, J. R. eds.), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 283–317
Chisholm, V. T., Lea, H. Z., Rai, R., and Cooper, T. G. (1987) Regulation of allantoate transport in wild-type and mutant strains of Saccharomyces cerevisiae. J. Bacteriol. 169, 1684–1690
Rai, R., Genbauffe, F., Lea, H. Z., and Cooper, T. G. (1987) Transcriptional regulation of the DAL5 gene in Saccharomyces cerevisiae. J. Bacteriol. 169, 3521–3524
Schoun, J. and Lacroute, F. (1969) Etude physiologique d’une mutation permettant l’incoporation d’acide ureidosuccinique chez la levure. C. R. Acad. Sci. 269, 1412–1414
Lacroute, F. (1971) Non-Mendelian mutation allowing ureidosuccinic acid uptake in yeast. J. Bacteriol. 106, 519–522
Drillien, R. and Lacroute, F. (1972) Ureidosuccinic acid uptake in yeast and some aspects of its regulation. J. Bacteriol. 109, 203–208
Drillien, R., Aigle, M., and Lacroute, F. (1973) Yeast mutants pleiotropically impaired in the regulation of the two glutamate dehydrogenases. Biochem. Biophys. Res. Commun. 53, 367–372
Aigle, M. and Lacroute, F. (1975) Genetical aspects of [URE3], a non-Mendelian, cytoplasmically inherited mutation in yeast. Mol. Gen. Genet. 136, 327–335
Mitchell, A. P. and Magasanik, B. (1984) Regulation of glutamine-repressible gene products by the GLN3 function in Saccharomyces cerevisiae. Mol. Cell. Biol. 4, 2758–2766
Courchesne, W. E. and Magasanik, B. (1988) Regulation of nitrogen assimilation in Saccharomyces cerevisiae: roles of the URE2 and GLN3 genes. J. Bacteriol. 170, 708–713
Coschigano, P. W. and Magasanik, B. (1991) The URE2 gene product of Saccharomyces cerevisiae plays an important role in the cellular response to the nitrogen source and has homology to glutathione S-transferases. Mol. Cell. Biol. 11, 822–832
Edskes, H. K., Hanover, J. A., and Wickner, R. B. (1999) Mks1p is a regulator of nitrogen catabolism upstream of Ure2p in Saccharomyces cerevisiae. Genetics 153, 585–594
Beck, T. and Hall, M. N. (1999) The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402, 689–692
Cardenas, M. E., Cutler, N. S., Lorenz, M. C., Di Como, C. J., and Heitman, J. (1999) The TOR signaling cascade regulates gene expression in response to nutrients. Genes Dev. 13, 3271–3279
Hardwick, J. S., Kuruvilla, F. G., Tong, J. K., Shamji, A. F., and Schreiber, S. L. (1999) Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the tor proteins. Proc. Natl. Acad. Sci. USA 96, 14,866–14,870
Cox, B. S. (1965) PSI, a cytoplasmic suppressor of super-suppressor in yeast. Heredity 20, 505–521
Young, C. S. H. and Cox, B. S. (1971) Extrachromosomal elements in a supersuppression system of yeast. 1. A nuclear gene controlling the inheritance of the extrachromosomal elements. Heredity 26, 413–422
Young, C. S. H. and Cox, B. S. (1972) Extrachromosomal elements in a supersuppression system of yeast. II. Relations with other extrachromosomal elements. Heredity 28, 189–199
Leibowitz, M. J. and Wickner, R. B. (1978) Pet18: a chromosomal gene required for cell growth and for the maintenance of mitochondrial DNA and the killer plasmid of yeast. Mol. Gen. Genet. 165, 115–121
Cox, B. S., Tuite, M. F., and McLaughlin, C. S. (1988) The Psi factor of yeast: a problem in inheritance. Yeast 4, 159–179
Hawthorne, D. C. and Mortimer, R. K. (1968) Genetic mapping of nonsense suppressors in yeast. Genetics 60, 735–742
Inge-Vechtomov, S. G. and Andrianova, V. M. (1970) Recessive super-suppressors in yeast. Genetika (Russ.) 6, 103–115
Stansfield, I., Jones, K. M., Kushnirov, V. V., Dagkesamanskaya, A. R., Poznyakovski, A. I., Paushkin, S. V., et al. (1995) The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae. EMBO J. 14, 4365–4373
Zhouravleva, G., Frolova, L., LeGoff, X., LeGuellec, R., Inge-Vectomov, S., Kisselev, L., et al. (1995) Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J. 14, 4065–4072
Singh, A. C., Helms, C., and Sherman, F. (1979) Mutation of the non-Mendelian suppressor [PSI] in yeast by hypertonic media. Proc. Natl. Acad. Sci. USA 76, 1952–1956
Lund, P. M. and Cox, B. S. (1981) Reversion analysis of [psi-] mutations in Saccharomyces cerevisiae. Genet. Res. 37, 173–182
Chernoff, Y. O., Derkach, I. L., and Inge-Vechtomov, S. G. (1993) Multicopy SUP35 gene induces de-novo appearance of psi-like factors in the yeast Saccharomyces cerevisiae. Curr. Genet. 24, 268–270
Doel, S. M., McCready, S. J., Nierras, C. R., and Cox, B. S. (1994) The dominant PNM2–mutation which eliminates the [PSI] factor of Saccharomyces cerevisiae is the result of a missense mutation in the SUP35 gene. Genetics 137, 659–670
TerAvanesyan, A., Dagkesamanskaya, A. R., Kushnirov, V. V., and Smirnov, V. N. (1994) The SUP35 omnipotent suppressor gene is involved in the maintenance of the non-Mendelian determinant [psi+] in the yeast Saccharomyces cerevisiae. Genetics 137, 671–676
Masison, D. C. and Wickner, R. B. (1995) Prion-inducing domain of yeast Ure2p and protease resistance of Ure2p in prion-containing cells. Science 270, 93–95
Masison, D. C., Maddelein, M.-L., and Wickner, R. B. (1997) The prion model for [URE3] of yeast: spontaneous generation and requirements for propagation. Proc. Natl. Acad. Sci. USA 94, 12,503–12,508
Maddelein, M.-L. and Wickner, R. B. (1999) Two prion-inducing regions of Ure2p are non-overlapping. Mol. Cell. Biol. 19, 4516–4524
TerAvanesyan, M. D., Kushnirov, V. V., Dagkesamanskaya, A. R., Didichenko, S. A., Chernoff, Y. O., Inge-Vechtomov, S. G., et al. (1993) Deletion analysis of the SUP35 gene of the yeast Saccharomyces cerevisiae reveals two non-overlapping functional regions in the encoded protein. Mol. Microbiol. 7, 683–692
Derkatch, I. L., Chernoff, Y. O., Kushnirov, V. V., Inge-Vechtomov, S. G., and Liebman, S. W. (1996) Genesis and variability of [PSI] prion factors in Saccharomyces cerevisiae. Genetics 144, 1375–1386
Kikuchi, Y., Shimatake, H., and Kikuchi, A. (1988) A yeast gene required for the G1 to S transition encodes a protein containing an A kinase target site and GTPase domain. EMBO J. 7, 1175–1182
Kushnirov, V. V., TerAvanesyan, M. D., Telckov, M. V., Surguchov, A. P., Smirnov, V. N., and Inge-Vechtomov, S. G. (1988) Nucleotide sequence of the SUP2(SUP35) gene of Saccharomyces cerevisiae. Gene 66, 45–54
Wilson, P. G. and Culbertson, M. R. (1988) SUF12 suppressor protein of yeast: a fusion protein related to the EF-1 family of elongation factors. J. Mol. Biol. 199, 559–573
Kochneva-Pervukhova, N. V., Poznyakovski, A. I., Smirnov, V. N., and Ter-Avanesyan, M. D. (1998) C-terminal truncation of the Sup35 protein increases the frequency of de novo gneration of a prion-based [PSI+] determinant in Saccharmyces cerevisiae. Curr. Genet. 34, 146–151
DePace, A. H., Santoso, A., Hillner, P., and Weissman, J. S. (1998) A critical role for amino-terminal glutamine/asparagine repeats in the formation and propagation of a yeast prion. Cell 93, 1241–1252
Liu, J. J. and Lindquist, S. (1999) Oligopeptide-repeat expansions modulate protein-only’ inheritance in yeast. Nature 400, 573–576
Owen, F., Poulter, M., Lofthouse, R., Collinge, J., Crow, T. J., Risby, D. et al. (1989) Insertion in prion protein gene in familial Creutzfeldt-Jakob disease. Lancet 1, 51–52
Fischer, M., Rulicke, T., Raeber, A., Sailer, A., Moser, M., Oesch, B., et al. (1996) Prion protein (PrP) with amino-terminal deletions restoring susceptibility of PrPknockout mice to scrapie. EMBO J. 15, 1255–1264
Paushkin, S. V., Kushnirov, V. V., Smirnov, V. N., and Ter-Avanesyan, M. D. (1996) Propagation of the yeast prion-like [psi+] determinant is mediated by oligomerization of the SUP35-encoded polypeptide chain release factor. EMBO J. 15, 3127–3134
Patino, M. M., Liu, J.-J., Glover, J. R., and Lindquist, S. (1996) Support for the prion hypothesis for inheritance of a phenotypic trait in yeast. Science 273, 622–626
Paushkin, S. V., Kushnirov, V. V., Smirnov, V. N., and Ter-Avanesyan, M. D. (1997) In vitro propagation of the prion-like state of yeast Sup35 protein. Science 277, 381–383
King, C.-Y., Tittmann, P., Gross, H., Gebert, R., Aebi, M., and Wuthrich, K. (1997) Prion-inducing domain 2-114 of yeast Sup35 protein transforms in vitro into amyloid-like filaments. Proc. Natl. Acad. Sci. USA 94, 6618–6622
Glover, J. R., Kowal, A. S., Shirmer, E. C., Patino, M. M., Liu, J.-J., and Lindquist, S. (1997) Self-seeded fibers formed by Sup35, the protein determinant of [PSI+], a heritable prion-like factor of S. cerevisiae. Cell 89, 811–819
Edskes, H. K., Gray, V. T., and Wickner, R. B. (1999) The [URE3] prion is an aggregated form of Ure2p that can be cured by overexpression of Ure2p fragments. Proc. Natl. Acad. Sci. USA 96, 1498–1503
Taylor, K. L., Cheng, N., Williams, R. W., Steven, A. C., and Wickner, R. B. (1999) Prion domain initiation of amyloid formation in vitro from native Ure2p. Science 283, 1339–1343
Chernoff, Y. O. and Ono, B.-I. (1992) Dosage-dependent modifiers of PSI-dependent omnipotent suppression in yeast, in Protein Synthesis and Targeting in Yeast, (Brown, A. J. P., Tuite, M. F., and McCarthy J. E. G., eds.), Springer-Verlag, Berlin. pp. 101–107
Chernoff, Y. O., Lindquist, S. L., Ono, B.-I., Inge-Vechtomov, S. G., and Liebman, S. W. (1995) Role of the chaperone protein Hsp104 in propagation of the yeast prion-like factor [psi+]. Science 268, 880–884
Parsell, D. A., Kowal, A. S., Singer, M. A., and Lindquist, S. (1994) Protein disaggregation mediated by heat-shock protein Hsp104. Nature 372, 475–478
Sanchez, V. and Lindquist, S. L. (1990) HSP104 required for induced thermotolerance. Science 248, 1112–1115
James, P., Pfund, C., and Craig, E. A. (1997) Functional specificity among Hsp70 molecular chaperones. Science 275, 387–389
Ziegelhoffer, T., Johnson, J. L., and Craig, E. A. (1996) Chaperones get Hip. protein folding. Curr Biol. 6, 272–275
Newnam, G. P., Wegrzyn, R. D., Lindquist, S. L., and Chernoff, Y. O. (1999) Antagonistic interactions between yeast chaperones Hsp104 and Hsp70 in prion curing. Mol. Cell. Biol. 19, 1325–1333
Pfund, C., Lopez-Hoyo, N., Ziegelhoffer, T., Schilke, B. A., Lopez-Buesa, P., Walter, W. A., et al. (1998) The molecular chaperone Ssb from Saccharomyces cerevisiae is a component of the ribosome-nascent chain complex. EMBO J. 17, 3981–3989
Chernoff, Y. O., Newnam, G. P., Kumar, J., Allen, K., and Zink, A. D. (1999) Evidence for a protein mutator in yeast: role of the Hsp70-related chaperone Ssb in formation, stability and toxicity of the [PSI+] prion. Mol. Cell. Biol. 19, 8103–8112
Matsuura, A. and Anraku, Y. (1993) Characterization of the MKS1 gene, a new negative regulator of the ras-cyclic AMP pathway in Saccharomyces cerevisiae. Mol. Gen. Genet. 238, 6–16
Feller, A., Ramos, F., Peirard, A., and Dubois, E. (1997) Lys80p of Saccharomyces cerevisiae, previously proposed as a specific repressor of LYS genes, is a pleiotropic regulatory factor identical to Mks1p. Yeast 13, 1337–1346
Derkatch, I. L., Bradley, M. E., and Liebman, S. W. (1998) Overexpression of the SUP45 gene encoding a Sup35p-binding protein inhibits the induction of the de novo appearance of the [PSI+] prion. Proc Natl Acad Sci USA 95, 2400–2405
Derkatch, I. L., Bradley, M. E., Zhou, P., Chernoff, Y. O., and Liebman, S. W. (1997) Genetic and environmental factors affecting the de novo appearance of the [PSI+] prion in Saccharomyces cerevisiae. Genetics 147, 507–519.
Begueret, J., Turq, B., and Clave, C. (1994) Vegetative incompatibility in filamentous fungi: het genes begin to talk. Trends Genet. 10, 441–446.
Rizet, G. (1952) Les phenomenes de barrage chez Podospora anserina: analyse genetique des barrages entre les souches s et S. Rev. Cytol. Biol. Veg. 13, 51–92.
Beisson-Schecroun, J. (1962) Incompatibilte cellulaire et interactions nucleocytoplasmiques dans les phenomenes de barrage chez Podospora anserina. Ann. Genet. 4, 3–50.
Coustou, V., Deleu, C., Saupe, S. J., and Begueret, J. (1999) Mutational analysis of the [Het-s] prion analog of Podospora anserina: a short N-terminal peptide allows prion propagation. Genetics 153, 1629–1640.
Tuite, M. F., Mundy, C. R., and Cox, B. S. (1981) Agents that cause a high frequency of genetic change from [psi+] to [psi-] in Saccharomyces cerevisiae. Genetics 98, 691–711.
Eaglestone, S. S., Ruddock, L. W., Cox, B. S., and Tuite, M. F. (2000) Guanidine hydrochloride blocks a critical step in the propagation of the prion-like determinant [PSI+] of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97, 240–244.
Bousset, L., Beirhali, H., Janin, J., Melki, R., and Morera, S. (2001) Structure of the globular region of the prion protein Ure2 from the yeast Saccharomyces cerevisiae Structure 9, 39–46.
Chernoff, Y. O., Galkin, A. P., Lewitin, E., Chernova, T. A., Newnam, G. P., and Belenkly, S. M. (2000). Evolutionary conservation of prion-forming abilities of the yeast Sup35 protein. Molec. Microbiol. 35, 865–876.
Choi, J. H., Lou, W., and Vancura, A. (1998) A novel membrane-bound glutathione S-transferase functions in the stationary phase of the yeast Saccharomyces cerevisiae. J. Biol. Chem. 273, 29,915–19,922.
Jung, G., Jones, G., Wegrzyn, R. D., and Masison, D. C. (2000) A role for cytosolic Hsp70 in yeast [PSI+] prion propagation and [PSI+] as a cellular stress. Genetics 156, 559–570.
Jung, G., and Masison, D. C. (2001) Guanidine hydrochloride inhibits Hsp104 activity in vivo: a possible explanation for its effect in curing yeast prions. Curr. Microbiol. Submitted.
Kushnirov, V. V., Kochneva-Pervukhova, N. V., Cechenova, M. B., Frolova, N. S., and Ter-Avanesyan, M. D. (2000) Prion properties of the Sup35 protein of yeast Pichia methanolica. EMBO J. 19, 324–331.
Kushnirov, V. V., Ter-Avanesyan, M. D., Didichenko, S. A., Smirnov, V. N., Chernoff, Y. O., Derkach, I. L. et al. (1990) Divergence and conservation of SUP2 (SUP35) gene of yeasts Pichia pinus and Saccharomyces cerevisiae. Yeast 6, 461–472.
Moriyama, H., Edskes, H. K., and Wickner, R. B. (2000) [URE3] prion propagation in Saccharomyces cerevisiae: requirement for chaperone Hsp104 and curing by overexpressed chaperone Ydj1p. Mol. Cell. Biol. 20, 8916–8922.
Santoso, A., Chien, P. Osherovich, L. Z., and Weissman, J. S. (2000) Molecular basis of a yeast prion species barrier. Cell 100, 277–288.
Sondheimer, N. and Lindquist, S. (2000) Rnq1: An epigenetic modifier of preotein function inyeast. Molec. Cell 5, 163–172.
Speransky, V. Taylor, K. L. Edskes, H. K. Wickner, R. B., and Steven, A., (2001). Prion filament networks in [URE3] cells of Saccharomyces cerevisiae. J. Cell. Biol. submitted.
Umland, T. C., Taylor, K. L. Rhee, S., Wickner, R. B., and Davies, D. R. (2001). The crystal structure of the nitrogen catabolite regulatory fragment of the yeast prion protein Ure2p. Proc. natl. Acad. Sci. USA 98, 1459–1464.
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Wickner, R.B., Edskes, H.K., Taylor, K.L., Maddelein, ML., Moriyama, H., Tibor Roberts, B. (2001). Prions of Yeast From Cytoplasmic Genes to Heritable Amyloidosis. In: Baker, H.F. (eds) Molecular Pathology of the Prions. Methods in Molecular Medicine™, vol 59. Humana Press. https://doi.org/10.1385/1-59259-134-5:237
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