Abstrect
Fluorescent automated DNA sequencing based on ″one-lane, four-dye″ technology has played a pivotal role in the success of the human genome project. One Applied Biosystems 377 sequencer can produce at least two runs per day of sequence reads averaging 750 bases in length, each run produces up to 96 reads. Improvements in sequencing chemistry (better polymerases and higher sensitivity dyes) have resulted in higher quality, more accurate sequencing data (1,2). This technology will be of enormous value in the next stage of genome sequencing, when the nature of sequence polymorphism in individual genes will be used to understand the complex relationships between genotype and phenotype. Fluorescent DNA sequencing is also rapidly becoming established as the technology of choice in basic research and clinical disciplines; methods for the molecular diagnosis of genetic disorders, pathogen identification, and genetic identification from biological specimens have all been developed and are being utilized in the field of DNA diagnostics (3–5).
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Lee, L. G., Spurgeon, S. L., Heiner, C. R., Benson, S. C., Rosenblum, B. B., Menchen, S. M., Graham, R. J., Constantinescu, A., Upadhya, K. G., and Cassel, J. M. (1997) New energy transfer dyes for DNA sequencing. Nucleic Acids Res. 25, 2816–2822.
Rosenblum, B.B., Lee, L. G., Spurgeon, S. L., Khan, S. H., Menchen, S. M., Heiner, C. R., and Chen, S. M. (1997) New dye-labeled terminators for improved DNA sequencing patterns. Nucleic Acids Res. 25, 4500–4504.
Human disease research (1996) Biosystems Reporter 224, vol. 2; Applied Biosystems.
Disease gene discoveries made with ABI PRISM Systems (1997) Applied Biosystems.
Biotech breakthroughs (1998) Biosystems Reporter 29, vol. 1; Applied Biosystems.
dRhodamine terminator cycle sequencing kit (1997) Product bulletin; Applied Biosystems.
Sequencing large DNA templates (1998) User Bulletin; Applied Biosystems.
Devine, S. E. and Boeke, J. D. (1994) Efficient integration of artificial transposons into plasmid targets in vitro: a useful tool for DNA mapping, sequencing and genetic analysis. Nucleic Acids Res. 22, 3765–3772.
Taylor, R. G., Walker, D. C., and McInnes R.R. (1993) E. coli host strains significantly affect the quality of small scale plasmid DNA preparations used for sequencing. Nucleic Acids Res. 21, 1677–1678.
The Qiagen guide to template purification and DNA sequencing, 2nd ed. (1998), Qiagen.
Optimizing PCR with AmpliTaq Gold DNA polymerase (1997) Application Note; Applied Biosystems.
The benefits of AmpliTaq Gold DNA polymerase in generating PCR templates for sequencing (1997) Application Note; Applied Biosystems.
Comparative PCR sequencing: A guide to sequencing-based mutation detection (1995) Applied Biosystems.
Precipitation methods to remove residual dye terminators from sequencing reactions. (1998) User Bulletin; Applied Biosystems.
Gel pouring with the redesigned cassette and fixtures (1998) User Bulletin; Applied Biosystems.
Improved gel formulations for extended sequencing read lengths (1997) User Bulletin; Applied Biosystems.
Achieving longer high-accuracy reads on the 377 sequencer (1999) User Bulletin; Applied Biosystems.
Optimizing resolution on the 96 lane upgrade (1999) User Bulletin; Applied Biosystems.
ABI PRISM lane guide lane identification kit (1999) Protocol; Applied Biosystems.
Cleaning glass plates to eliminate temporary loss of signal (1998) User Bulletin; Applied Biosystems.
Acrylamide polymerization-A practical approach (1997) Bio-Rad Laboratories, Inc.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2001 Humana Press Inc.
About this protocol
Cite this protocol
MacBeath, J.R.E., Harvey, S.S., Oldroyd, N.J. (2001). Automated Fluorescent DNA Sequencing on the ABI PRISM 377. In: Graham, C.A., Hill, A.J.M. (eds) DNA Sequencing Protocols. Methods in Molecular Biology™, vol 167. Humana Press. https://doi.org/10.1385/1-59259-113-2:119
Download citation
DOI: https://doi.org/10.1385/1-59259-113-2:119
Publisher Name: Humana Press
Print ISBN: 978-0-89603-716-8
Online ISBN: 978-1-59259-113-8
eBook Packages: Springer Protocols