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Analysis of Transcriptional Control Mechanisms II Techniques for Characterization of trans-Acting Factors

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Angiotensin Protocols

Part of the book series: Methods in Molecular Medicineā„¢ ((MIMM,volume 51))

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Abstract

cis-Acting DNA control elements, enhancers and promoters, function to control gene expression by acting as targets for specific DNA-binding proteins (trans-acting factors). trans-acting factors are sequence-specific DNA-binding proteins that recognize specific signatures in base composition of the DNA, and upon binding, are able to influence transcriptional activity of the core promoter by multiple diverse mechanisms. These mechanisms include direct interaction with the preinitiation complex, recruitment of additional bridging proteins (coactivators), or induction of chromatin remodeling (such as altering nucleosomal phasing). These mechanisms are coordinated to result in changes in gene expression that control critical events in cellular differentiation and responses to extracellular signals or stressors.

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References

  1. Baeuerle, P. A. (1991) The inducible transcription activator NF-kappa B: regulation by distinct protein subunits. Biochim. Biophys. Acta 1072, 63ā€“80.

    CASĀ  PubMedĀ  Google ScholarĀ 

  2. Siebenlist, U., Franzoso, G., and Brown, K. (1994) Structure, regulation and function of NF-KB. Annu. Rev. Cell Biol. 10, 405ā€“55.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  3. Brasier, A. R. and Li, J. (1996) Mechanisms for inducible control of angiotensinogen gene transcription. J. Hypertens. 27 (2), 465ā€“75.

    CASĀ  Google ScholarĀ 

  4. Beato, M. (1989) Gene regulation by steroid hormones. Cell 56, 335ā€“344.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  5. Heinrich, P. C., Behrmann, I., Muller-Newen, G., Schaper, F., and Graeve, L. (1998) Interleukin-6-type cytokine signalling through the gp130/Jak/STAT pathway. Biochem. J. 334, 297ā€“314.

    CASĀ  PubMedĀ  Google ScholarĀ 

  6. Darnell, J. E., Jr. (1997) STATS and gene regulation. Science 277, 1630ā€“1635.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  7. Mueller, P. R. and Wold, B. (1991) Ligation-mediated PCR: applications to genomic footprinting. Methods 2, 20ā€“31.

    ArticleĀ  CASĀ  Google ScholarĀ 

  8. Pfeifer, G. P., Steigerwald, S. B., Mueller, P. R., Wold, B., and Riggs, A. D. (1989) Genomic sequencing and methylation analysis by ligation mediated PCR. Science 246, 810ā€“813.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  9. Patterson, C., Wu, Y., Lee, M., DeVault, J., Runge, M. S., and Haber, E. (1997) Nuclear protein interactions with the human KDR/flk-1 promoter in vivo. J. Biol. Chem. 272, 8410ā€“8416.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  10. Brasier, A. R., Jamaluddin, M., Casola, A., Duan, W., Shen, Q., and Garofalo, R. (1998) A promoter recruitment mechanism for TNFa-induced IL-8 transcription in type II pulmonary epithelial cells: dependence on nuclear abundance of Rel A, NF-KB1 and c-Rel transcription factors. J. Biol. Chem. 273, 3551ā€“3561.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  11. Li, J. and Brasier, A. R. (1996) Angiotensinogen gene activation by AII is mediated by the Rel A (NF-KB p65) transcription factor: one mechanism for the renin angiotensin system (RAS) positive feedback loop in hepatocytes. Mol. Endocrinol. 10, 252ā€“264.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  12. Garofalo, R., Sabry, M., Jamaluddin, M., Yu, R. K., Casola, A., Ogra, P. L., and Brasier, A. R. (1996) Transcriptional activation of the interleukin-8 gene by RS V infection in alveolar epithelial cells: Nuclear translocation of the Rel A transcription factor as a mechanism producing airway mucosal inflammation. J. Virol. 70, 8773ā€“8781.

    CASĀ  PubMedĀ  Google ScholarĀ 

  13. Maxam, A. and Gilbert, W. (1980) Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65, 499ā€“560.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  14. Hendrickson, W. and Scheif, R. (1985) A dimer of AraC protein contacts three adjacent major groove regions at the Ara I DNA site. Proc. Natl. Acad. Sci. USA 82, 3129ā€“3133.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  15. Brasier, A. R., Ron, D., Tate, J. E., and Habener, J. F. (1990) A family of constitutive C/EBP-like DNA binding proteins attenuate the IL-1 alpha induced, NF kappa B mediated transactivation of the angiotensinogen gene acute-phase response element. EMBO J. 9, 3933ā€“3944.

    CASĀ  PubMedĀ  Google ScholarĀ 

  16. Brasier, A. R. and Kumar, A. (1994) Identification of a novel determinant for basic domain-leucine zipper (bZIP) DNA-binding activity in the acute-phase 150 inducible nuclear factor-interleukin 6 transcription factor. J. Biol. Chem. 269, 10,341ā€“10,351.

    CASĀ  PubMedĀ  Google ScholarĀ 

  17. Ron, D., Brasier, A. R., Wright, K. A., Tate, J. E., and Habener, J. F. (1990) An inducible 50-kilodalton NF kappa B-like protein and a constitutive protein both bind the acute-phase response element of the angiotensinogen gene. Mol. Cell Biol. 10, 1023ā€“1032.

    CASĀ  PubMedĀ  Google ScholarĀ 

  18. King, D. J., Ventura, D. A., Brasier, A. R., and Gorenstein, D. G. (1998) Novel combinatorial selection of phosphorothioate oligonucleotide aptamers. Biochemistry 37, 16,489ā€“16,493.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  19. Pollock, R. and Treisman, R. (1990) A sensitive method for the determination of protein-DNA binding specificities. Nucleic Acids Res. 18, 6197ā€“6204.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  20. Szostak, J. W. (1992) In vitro genetics. Trends Biochem. Sci. 17, 89ā€“93.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  21. Thiesen, H.-J. and Bach, C. (1990) Target detection assay: a versatile procedure to determine DNA binding sites as demonstrated on SP1 protein. Nucleic Acids Res. 18, 3203ā€“3209.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  22. Croston, G. E., Laybourn, P. J., Paranjape, S. M., and Kadonaga, J. T. (1992) Mechanism of transcriptional antirepression by GAL4-VP16. Genes Dev. 6, 2270ā€“2281.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  23. Beato, M. (1996) Chromatin structure and the regulation of gene expression: remodeling at the MMTV promoter. J. Mol. Med. 74, 711ā€“724.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

  24. Cordingley, M. G., Riegel, A. T., and Hager, G. L. (1987) Steroid-dependent interaction of transcription factors with the inducible promoter of mouse mammary tumor virus in vivo. Cell 48, 261ā€“270.

    ArticleĀ  CASĀ  PubMedĀ  Google ScholarĀ 

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Ā© 2001 Humana Press Inc.

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Brasier, A.R., Sherman, C.T., Jamaluddin, M. (2001). Analysis of Transcriptional Control Mechanisms II Techniques for Characterization of trans-Acting Factors. In: Wang, D.H. (eds) Angiotensin Protocols. Methods in Molecular Medicineā„¢, vol 51. Humana Press. https://doi.org/10.1385/1-59259-087-X:127

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  • DOI: https://doi.org/10.1385/1-59259-087-X:127

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-763-2

  • Online ISBN: 978-1-59259-087-2

  • eBook Packages: Springer Protocols

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