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Identification of Differentially Expressed Genes in Young and Senescent T Cells

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Book cover Aging Methods and Protocols

Part of the book series: Methods in Molecular Medicine ((MIMM,volume 38))

Abstract

The need to analyze changes in gene expression patterns occuring in senescent cells has stimulated the search for proper methods to identify the actual differences between young and senescent cells. In studies of aging, differential display reverse transcriptase-polymerase chain reaction (DDRT-PCR) has already been applied successfully by several groups. Altered gene expression in young and senescent fibroblast cultures (1), human mammary epithelial cells (2), and rat brain cells (3, 4) has been detected with this technique.

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References

  1. Linskens, M. H., Feng, J., Andrews, W. H., Enlow, B. E., Saati, S. M., Tonkin, L. A., Funk, W. D., and Villeponteau, B. (1995) Cataloging altered gene expression in young and senescent cells using enhanced differential display. Nucleic Acids Res. 25, 3244–3251.

    Article  Google Scholar 

  2. Swisshelm, K., Ryan, K., Tsuchiya, K., and Sager, R. (1995) Enhanced expression of an insulin growth factor-like binding protein (mac 25) in senescent human mammary epithelial cells and induced expression with retinoic acid. Proc. Natl. Acad. Sci. USA 92, 4472–4476.

    Article  PubMed  CAS  Google Scholar 

  3. Salehi, M., Hodkins, M. A., Merry, B. J., and Goyns, M. H. (1996) Age-related changes in gene expression in the brain revealed by differential display. Experientia 15, 888–891.

    Article  Google Scholar 

  4. Wu, H. C. and Lee, E. H. (1997) Identification of a rat brain gene associated with aging by PCR differential display method. J. Mol. Neurosci. 8, 13–18.

    Article  PubMed  CAS  Google Scholar 

  5. Liang, P. and Pardee, A. B. (1992) Differential display of eucaryotic messenger RNA by means of the polymerase chain reaction. Science 257, 967–971.

    Article  PubMed  CAS  Google Scholar 

  6. Bauer, D., Muller, H., Reich, J., Riedel, H., Ahrenkiel, V., Warthoe, P., and Strauss, M. (1993) Identification of differentially expressed mRNA species by an improved display technique (DDRT-PCR) Nucleic Acids Res. 21, 4272–4280.

    Article  PubMed  CAS  Google Scholar 

  7. Liang, P., Bauer, D., Averboukh, L., Warthoe, P., Rohrwild, M., Muller, H., Strauss, M., and Pardee, A. B. (1995) Analysis of altered gene expression by differential display. Methods Enzymol. 254, 304–321.

    Article  PubMed  CAS  Google Scholar 

  8. Welsh, J., Chada, K., Datal, S. S., Cheng, R., Ralph, D., and McClelland, M. (1992) Arbitrary primed PCR fingerprinting of RNA. Nucleic Acids Res. 20, 4965–4970.

    Article  PubMed  CAS  Google Scholar 

  9. Welsh, J., Rampino, N., McClelland, M., and Perucho, M. (1995) Nucleic acid fingerprinting by PCR-based methods: applications to problems in aging and mutagenesis. Mutat. Res. 338, 215–229.

    PubMed  CAS  Google Scholar 

  10. McClelland, M. and Welsh, J. (1994) RNA fingerprinting by arbitrary primed PCR. PCR Methods Appl. 4, 66–81.

    Google Scholar 

  11. Liang, P., Averboukh, L., and Pardee, A. B. (1994) Method of differential display. Methods Mol. Genet. 5, 3–16.

    CAS  Google Scholar 

  12. Sambrook, F., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

    Google Scholar 

  13. Mandel, M. and Higa, A. (1970) Calcium dependent bacteriophage DNA infection. J. Mol. Biol. 53, 159–162.

    Article  PubMed  CAS  Google Scholar 

  14. Wei, Q., Xu, X., Cheng, L., Legerski, R. J., and Ali-Osman, F. (1995) Simultaneous amplification of four DNA repair genes and fÀ-actin in human lymphocytes by multiplex reverse transcriptase PCR. Cancer Res. 55, 5025–5029.

    PubMed  CAS  Google Scholar 

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© 2000 Humana Press Inc., Totowa, NJ

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Engel, A., Adibzadeh, M., Pawelec, G. (2000). Identification of Differentially Expressed Genes in Young and Senescent T Cells. In: Barnett, Y.A., Barnett, C.R. (eds) Aging Methods and Protocols. Methods in Molecular Medicine, vol 38. Humana Press. https://doi.org/10.1385/1-59259-070-5:97

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  • DOI: https://doi.org/10.1385/1-59259-070-5:97

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-582-9

  • Online ISBN: 978-1-59259-070-4

  • eBook Packages: Springer Protocols

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