Skip to main content

The Use of Immobilized Mismatch Binding Protein in Mutation/SNP Detection

  • Protocol
DNA Repair Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 152))

  • 534 Accesses

Abstract

The detection of single-base change mutations and polymorphisms is of enormous importance, both in research and in diagnostics. The ability to identify and score single nucleotide polymorphisms (SNPs) is becoming a key element of gene identification and mapping, and the future of human diagnostics depends on having the ability to detect single-base change mutations, because these represent the vast majority of disease-causing and diseaseassociated mutations. An ideal system for detecting and scoring these mutations and SNPs will have certain key characteristics: (1) robustness: the method will be user friendly and not subject to wide fluctuations caused by small changes in experimental conditions; (2) high throughput: given the requirements of genomic research and large-scale diagnostics, a useful method of mutation/SNP detection must be able to handle thousands of samples per day with limited technician effort; (3) low cost: for wide-spread use in both research and clinical diagnostics, low-cost and easy availability of both equipment and reagents is crucial; (4) no gels: this requirement is primarily to meet the high throughput requirement; (5) no radioactivity: given the problems of radioactive material handling and disposal and the availability of a wide variety of alternatives, radioactivity should not be a part of the ideal mutation detection system. Although there may be additional preferences of individual researchers, any mutation/SNP detection system that successfully

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Modrich, P. and Lahue, R. (1996) Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu. Rev. Biochem. 65, 101–133.

    Article  PubMed  CAS  Google Scholar 

  2. Dohet, C., Wagner, R., and Radman, M. (1985) Repair of defined single-base-pair mismatches in Escherichia coli. Proc. Natl. Acad. Sci. USA 82, 503–505.

    Article  PubMed  CAS  Google Scholar 

  3. Su, S.-S., Lahue, R. S., Au, K. G., and Modrich, P. (1988) Mispair specificity of methyl-directed DNA mismatch correction in vitro. J. Biol. Chem. 263, 6829–6835.

    PubMed  CAS  Google Scholar 

  4. Fazakerley, G. V., Quignard, E., Woisard, A., et al. (1986) Structures of mismatched basepairs in DNA and their recognition by the E. coli mismatch repair system. EMBO J. 5, 3697–3703.

    PubMed  CAS  Google Scholar 

  5. Jones, M., Wagner, R., and Radman, M. (1987) Repair of a mismatch is influenced by the base composition of the surrounding nucleotide sequence. Genetics 115, 605–610.

    PubMed  CAS  Google Scholar 

  6. Parker, B. O. and Marinus, M. G. (1992) Repair of DNA heteroduplexes containing small heterologous sequences in Escherichia coli. Proc. Natl. Acad. Sci. USA 89, 1730–1734.

    Article  PubMed  CAS  Google Scholar 

  7. Wagner, R., Debbie, P., and Radman, M. (1995) Mutation detection using immobilized mismatch binding protein (MutS). Nucleic Acids Res. 23, 3944–3948.

    Article  PubMed  CAS  Google Scholar 

  8. Debbie, P., Young, K., Pooler, L., et al. (1997) Allele identification using immobilized mismatch binding protein: detection and identification of antibiotic resistant bacteria and determination of sheep susceptibility to scrapie. Nucleic Acids Res. 25, 4825–4829.

    Article  PubMed  CAS  Google Scholar 

  9. Wagner, R. and Dean, A. (1999) The use of immobilized mismatch binding protein for the optimization of PCR fidelity, in PCR Applications (Innis, M., Gelfand, M., and Sninsky, J., eds.), Academic, New York, pp. 95–104.

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2000 Humana Press Inc.

About this protocol

Cite this protocol

Wagner, R., Dean, A. (2000). The Use of Immobilized Mismatch Binding Protein in Mutation/SNP Detection. In: Vaughan, P. (eds) DNA Repair Protocols. Methods in Molecular Biology™, vol 152. Humana Press. https://doi.org/10.1385/1-59259-068-3:159

Download citation

  • DOI: https://doi.org/10.1385/1-59259-068-3:159

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-643-7

  • Online ISBN: 978-1-59259-068-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics