Skip to main content

Analysis of Hydrophobic Proteins and Peptides by Mass Spectrometry

  • Protocol
Mass Spectrometry of Proteins and Peptides

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 146))

Abstract

The introduction of electrospray ionization mass spectrometry (ESI-MS) (1) and matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) (2) in the late eighties has had a tremendous influence on the analysis of biomolecules at the molecular level in biochemistry and biology. The vast number of publications dealing with many different aspects of biomolecules has, however, focused primarily on water-soluble compounds (3). The poor solubility and scarcity of hydrophobic peptides and proteins has hampered extensive analysis of these materials by ESI-MS or by MALDI-MS.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Fenn J. B., Mann M., Meng C. K., Wong S. F., and Whitehouse C. M. (1989) Electrospray ionization for mass spectrometry of large biomolecules. Science 246, 64–71.

    Article  PubMed  CAS  Google Scholar 

  2. Karas M. and Hillenkamp F. (1988) Laser desorption/ionization of proteins with molecular masses exceeding 10,000 daltons. Anal. Chem. 60, 2299–2301.

    Article  PubMed  CAS  Google Scholar 

  3. Burlingame A. L., Boyd R. K., and Gaskell S. J. (1998) Mass spectrometry. Anal. Chem. 70, 647R–716R.

    Article  PubMed  CAS  Google Scholar 

  4. Schey K. L., Papac D. I., Knapp D. R., and Crouch R. K. (1992) Matrix-assisted laser desorption mass spectrometry of rhodopsin and bacteriorhodopsin. Biophys. J. 63, 1240–1243.

    Article  PubMed  CAS  Google Scholar 

  5. Rosinke B., Strupat K., Hillenkamp F., Rosenbusch J., Dencher N., Kruger U., et al. (1995) Matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS) of membrane proteins and non-covalent complexes. J. Mass Spectrom. 30, 1462–1468.

    Article  CAS  Google Scholar 

  6. Barnidge D. R., Dratz E. A., Sunner J., and Jesaitis A. J. (1997) Identification of transmembrane tryptic peptides of rhodopsin using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Protein Sci. 6, 816–824.

    Article  PubMed  CAS  Google Scholar 

  7. Allmaier G., Schaffer C., Messner P., Rapp U., and Mayer-Posner F. J. (1995) Accurate determination of the molecular weight of the major surface layer protein isolated from Chlostridium thermosaccharolyticum by time-of-flight mass spectrometry.J. Bacteriol. 177, 1402–1404.

    PubMed  CAS  Google Scholar 

  8. Ghaim J. B., Tsatsos P. H., Katsonouri A., Mitchell D. M., Salcedo-Hernandez R., and Gennis R. B. (1997) Matrix-assisted laser desorption/ionization mass spectrometry of membrane proteins: demonstration of a simple method to determine subunit molecular weights of hydrophobic subunits. Biochim. Biophys. Acta 1330, 113–120.

    Article  PubMed  CAS  Google Scholar 

  9. Marx M. K., Mayer-Posner F., Soulimane T., and Buse G. (1998) Matrix-assisted laser desorption/ionization mass spectrometry analysis and thiol-group determination of isoforms of bovine cytochrome c oxidase, a hydrophobic multi-subunit membrane protein. Anal. Biochem. 256, 192–199.

    Article  PubMed  CAS  Google Scholar 

  10. Schey K. L. (1996) Hydrophobic proteins and peptides analyzed by matrix-assisted laser desorption/ionization, in Methods in Molecular Biology, vol. 61 (Chapman J. R., ed.), Humana, Totowa. NJ, pp. 227–230.

    Google Scholar 

  11. Schnaible V., Michels J., Zeth K., Freigang J., Welte W., Buhler S., et al. (1997) Approaches to the characterization of membrane channel proteins (porins) by UV MALDI-MS. Int. J. Mass Spectrom. Ion Processes 169/170, 165–177.

    Article  CAS  Google Scholar 

  12. Schindler P. A., Van Dorsselaer A., and Falick A. M. (1993) Analysis of hydrophobic proteins and peptides by electrospray ionization mass spectrometry.Anal. Biochem. 213, 256–263.

    Article  PubMed  CAS  Google Scholar 

  13. Hufnagel P., Schweiger U., Eckerskorn C., and Oesterhelt D. (1996) Electrospray ionization mass spectrometry of genetically and chemically modified bacteriorhodopsin. Anal. Biochem. 243, 46–54.

    Article  PubMed  CAS  Google Scholar 

  14. Schaller J., Pellascio B. C., and Schlunegger U. P. (1997) Analysis of hydrophobic proteins and peptides by electrospray ionization mass spectrometry. Rapid Commun. Mass Spectrom. 11, 418–426.

    Article  CAS  Google Scholar 

  15. Ball L.E., Oatis J.E., Jr., Dharmasiri. K.Busman M., Wang J., Cowden L.B., etal. (1998) Mass spectrometric analysis of integral membrane proteins: application to complete mapping of bacteriorhodopsin and rhodopsin. Protein Science 7, 758–764.

    Article  PubMed  CAS  Google Scholar 

  16. Whitelegge J. P., Gundersen C. B., and Faull K. F. (1998) Electrosprayionization mass spectrometry of intact intrinsic membrane proteins. Protein Sci. 7, 1423–1430.

    Article  PubMed  CAS  Google Scholar 

  17. Fearnley I. M. and Walker J. E. (1996) Analysis of hydrophobic proteins and peptides by electrospray ionization MS. Biochem. Soc. Trans. 24, 912–917.

    PubMed  CAS  Google Scholar 

  18. Sharma J., Panico M., Barber J., and Morris H. R. (1997) Characterization of the low molecular weight photosystem II reaction center subunits and their light-induced modifications by mass spectrometry. J. Biol. Chem. 272, 3935–3943.

    Article  PubMed  CAS  Google Scholar 

  19. Sharma J., Panico M., Barber J., and Morris H. R. (1997) Purification and determination of intact molecular mass by electrospray ionization mass spectrometry of the photosystem II reaction center subunits. J. Biol. Chem. 272, 33, 153–33, 157.

    CAS  Google Scholar 

  20. Le Maire M., Deschamps S., Møller J. V., Le Caer J.-P., and Rossier J. (1993) Electrospray ionization mass spectrometry on hydrophobic peptides electroeluted from sodium dodecyl sulfate—polyacrylamide gel electrophoresis application to the topology of the sarcoplasmic reticulum Ca ATPase. Anal. Biochem. 214, 50–57.

    Article  PubMed  CAS  Google Scholar 

  21. Ogorzalek Loo R. R., Dales N., and Andrews P. C. (1994) Surfactant effects on protein structure examined by electrospray ionization mass spectrometry. Protein Sci. 3, 1975–1983.

    Article  Google Scholar 

  22. Erni B., Zanolari B., and Kocher H. P. (1987) The mannose permease of E. coli consists of three different proteins. Amino acid sequence and function in sugar transport, sugar phosphorylation and penetration of phage (DNA. J. Biol. Chem. 262, 5238–5247.

    PubMed  CAS  Google Scholar 

  23. Wuethrich M. and Sigrist H. (1990) Peptide building blocks from bacteriorhodopsin: isolation and physicochemical characterization of two individual transmembrane segments. J. Protein Chem. 9, 201–207.

    Article  PubMed  CAS  Google Scholar 

  24. Buhr A., Flükiger K., and Erni B. (1994) The glucose transporter of E. coli. Overexpression, purification and characterization of functional domains. J. Biol. Chem. 269, 23, 437-23, 443.

    Google Scholar 

  25. Garavito R. M., Hinz U., and Neuhaus J. M. (1984) The crystallization of outer membrane proteins from E. coli. Studies on lamB and ompA gene products. J. Biol. Chem. 259, 4254–4257.

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2000 Humana Press Inc.

About this protocol

Cite this protocol

Schaller, J. (2000). Analysis of Hydrophobic Proteins and Peptides by Mass Spectrometry. In: Chapman, J.R. (eds) Mass Spectrometry of Proteins and Peptides. Methods in Molecular Biology™, vol 146. Humana Press, Totowa, NJ. https://doi.org/10.1385/1-59259-045-4:425

Download citation

  • DOI: https://doi.org/10.1385/1-59259-045-4:425

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-0-89603-609-3

  • Online ISBN: 978-1-59259-045-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics