Abstract
Strain identification of Chlamydia trachomatis has historically been accomplished using serotyping as a phenotypic marker to differentiate chlamydial isolates (1). The target for serotyping is the major outer membrane protein (MOMP) which is the most antigenically diverse and abundant surface protein of the organism. Polyclonal antibodies (PAbs) were initially used for typing and were able to identify serovars D through K and LI, L2, and L3 as primarily genital pathogens, and serovars A, B, Ba, and C as trachoma pathogens. However, these groupings are somewhat imprecise. As immunotyping methods evolved, MOMP-specific monoclonal antibodies (MAbs) were produced that were able to detect additional serovars of the organism (2,3). These include Da, la, and L2a (2). MAbs recognize serovar-, subspecies-, and species-specific epitopes (4,5) that reflect many of the amino acid variations found among the 18 known serovars of C. trachomatis, and are located within three of the four variable sequence regions of MOMP, termed variable segments (VS) 1,2, 3, and 4. Sequence analysis of the MOMP gene (omp1) supports these findings in that VS 1,2, and 4, in contrast to VS 3, contain the greatest degree of nucleotide sequence variation (6,7).
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References
Wang, S.-P. and Grayston, J. T. (1970) Immunologic relationship between genital TRIC, lymphogranuloma venereum, and related organisms in a new microtiter indirect immunofluorescence test. Am. J. Ophthalmol. 70, 367ā370.
Wang, S.-P. and Grayston, J. T. (1991) Three new serovars of Chlamydia trachomatis: Da, la, and L2a. J. Infect. Dis. 163, 403ā405.
Wang, S.-P., Kuo, C.-C, Barnes, R. C, Stephens, R. S., and Grayston, J. T. (1985) Immunotyping of Chlamydia trachomatis with monoclonal antibodies. J. Infect. Dis. 152, 791ā800.
Baehr, W., Zhang, Y. X., Joseph, T., Su, H., Nano, F. E., Everett, K., et al. (1988) Mapping antigenic domains expressed by Chlamydia trachomatis major outer membrane protein genes. Proc. Natl. Acad. Sci. 85, 4000ā4004.
Stephens, R. S., Wagar, E. A., and Schoolnik, G. (1988) High resolution mapping of serovar-specific and common antigenic determinants of the major outer membrane protein for Chlamydia trachomatis. J. Exp. Med. 167, 817ā831.
Stephens, R. S., Sanchez-Pescador, R., Wagar, E. A., Inouye, C, and Urdea, M. (1987) Diversity of Chlamydia trachomatis major outer membrane protein genes. J. Bacteriol. 169, 3879ā3885.
Yuan, Y., Zhang, Y.-X., Watkins, N. G., and Caldwell, H. D. (1989) Nucleotide and deduced amino acid sequences for the four variable domains of the major outer membrane proteins of the 15 Chlamydia trachomatis serovars. Infect. Immun. 57, 1040ā1049.
Barnes, R. C, Rompalo, A. M., and Stamm, W. E. (1987) Comparison of Chlamydia trachomatis serovars causing rectal and cervical infections. J. Infect. Dis. 156, 953ā958.
Batteiger, B. E., Fraiz, I, Newhall, W. J., Katz, B. P., and Jones, R. B. (1989) Association of recurrent chlamydial infection with gonorrhea. J. Infect. Dis. 159, 661ā669.
Suchland, R. J. and Stamm, W. E. (1991) Simplified microtiter cell culture method for rapid immunotyping of Chlamydia trachomatis. J. Clin. Microbiol. 29, 1333ā1338.
Dean, D. (1994) Molecular characterization of new Chlamydia trachomatis serological variants from a trachoma endemic region of Africa, in Chlamydial Infections (Orfila, J., et al., eds.), Societa Editrice Esculapio, Bologna, Italy, pp. 259ā262.
Dean, D., Oudens, E. M., Padian, N., Bolan, G., and Schachter, J. (1995) Major outer membrane protein variants of Chlamydia trachomatis are associated with severe upper genital tract infections and histopathology in San Francisco. J. Infect. Dis. 172, 1013ā1022.
Lampe, M. F., Suchland, R. J., and Stamm, W. E. (1993) Nucleotide sequence of the variable domains within the major outer membrane protein gene from serovariants of Chlamydia trachomatis. Infect. Immun. 61, 213ā219.
Stephens, R. S. (1993) Challenge of Chlamydia Research. Infect. Agents Dis. 1, 279ā293.
Sanger, F. S., Nicklen, S., and Coulson, A. R. (1977) DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463ā5467.
Lan, J., Meijer, C. J., van den Hoek, A. R., Ossewaarde, J. M., Walboomers, J. M., and Brule, A. J. (1995) Genotyping of Chlamydia trachomatis serovars derived from heterosexual partners and a detailed genomic analysis of serovar F. Genitouri. Med. 71, 299ā303.
Black, C. M., Tharpe, J. A., and Russell, H. (1992) Distinguishing Chlamydia species by restriction analysis of the major outer membrane protein gene. Mol. Cell. Probe 6, 395ā400.
Lan, J., Walboomers, J. M., Roosendaal, R., van Doornum, G. J., MacLaren, D. M., Meijer, C. J., et al. (1993) Direct detection and genotyping of Chlamydia trachomatis in cervical scrapes by using polymerase chain reaction and restriction fragment length polymorphism analysis. J. Clin. Microbiol. 31, 1060ā1065.
Frost, E. H., Deslandes, S., Veilleux, S., and Bourgauz-Ramoisy, D. (1991) Typing Chlamydia trachomatis by detection of restriction fragment length polymorphism in the gene encoding the major outer membrane protein. J. Infect. Dis. 163, 1103ā1107.
Gaydos, C. A., Bobo, L., Welsh, L., Hook, E. W., Viscidi, R., and Quinn, T. C. (1992) Gene typing of Chlamydia trachomatis by polymerase chain reaction and restriction endonuclease digestion. Sex. Trans. Dis. 19, 303ā308.
Holland, S. M., Gaydos, C. A., and Quinn, T. C. (1990) Detection and differentiation of Chlamydia trachomatis, Chlamydia psittaci, and Chlamydia pneumoniae by DNA amplification. J. Infect. Dis. 162, 984ā987
Peterson, E. M. and de la Maza, L. (1983) Characterization of Chlamydia DNA by restriction endonuclease cleavage. Infect. Immun. 41, 604ā608.
Rodriguez, P., Vekris, A., de Barbeyrac, B., Dutilh, V., Bonnet, J., and Bebear, C. (1991) Typing of Chlamydia trachomatis by restriction endonuclease analysis of the amplified major outer membrane protein gene. J. Clin. Microbiol. 29, 1132ā1136.
Chen, J. and Viola, M. V. (1991) A method to detect ras mutations in small subpopulations of cells. Anal. Biochem. 195, 51ā56.
Scieux, C, Grimont, F., Regnault, B., Bianchi, A., Kowalski, S., and Grimont, P. A. D. (1993) Molecular typing of Chlamydia trachomatis by random amplification of polymorphic DNA. Res. Microbiol. 144, 395ā404.
Sayada, C, Denamur, E., Grandchamp, B., Orfila, J., and Elion, J. (1995) Denaturing gradient gel electrophoresis analysis for the detection of point mutations in the Chlamydia trachomatis major outer membrane protein gene. J. Med. Microbiol. 43, 14ā25.
Sheffield, V. C, Cox, R., Lerman, L. R., and Meyer, R. M. (1989) Attachment of a 40-base-pair G + C rich sequence (GC clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc. Natl. Acad. Sci. USA 86, 232ā236.
Welch, J. and McClelland, M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18, 7213ā7218.
Pennisi, E. (1996) Chipping away at the human genome. Science 272, 1737.
Dean, D., Schachter, J., Dawson, C, and Stephens, R. S. (1992) Comparison of the major outer membrane protein sequence variant regions of B/Ba isolates: A molecular epidemiologic approach to Chlamydia trachomatis infections. J. Infect. Dis. 166, 383ā392.
Hayes, L. J., Bailey, R. L, Mabey, D. C. W., Clarke, I. N., Pickett, M. A, Watt, P. J., et al. (1992) Genotyping of Chlamydia trachomatis from a trachoma-endemic village in The Gambia by a nested polymerase chain reaction: Identification of strain variants. J. Infect. Dis. 166, 1173ā1177.
Yang, C. L., Maclean, I., and Brunham, R. C. (1993) DNA sequence polymorphism of the Chlamydia trachomatis ompl gene. J. Infect. Dis. 168, 1225ā1230.
Brunham, R., Yang, C, Maclean, I., Kimani, J., Maitha, G., and Plummer, F. (1994) Chlamydia trachomatis from individuals in a sexually transmitted diseases core group exhibit frequent sequence variation in the major outer membrane protein (omp1) gene. J. Clin. Invest. 94, 458ā463.
Frost, E. H., Deslandes, S., Gendron, D., Bourgaux-Ramoisy, D., and Bourgaux, P. (1995) Variation outside variable segments of the major outer membrane protein distinguishes trachoma from urogenital isolates of the same serovar of Chlamydia trachomatis. Genitouri. Med. 71, 18ā23.
Dean, D., Shama, A., Schachter, J., and Dawson, C. R. (1995) Molecular identification of an avian strain of Chlamydia psittaci causing severe keratoconjunctivitis in a bird fancier. Clin. Infect. Dis. 20, 1134ā1139.
Dean, D. and Stephens, R. S. (1994) Identification of individual genotypes of Chlamydia trachomatis in experimentally mixed infections and mixed infections among trachoma patients. J. Clin. Microbiol. 32, 1506ā1510.
(1989) Molecular Cloning: A Laboratory Manual, 2nd ed. (Sambrook, J., Fritsch, E. F., and Maniatis, T., eds.), Cold Spring Harbor Laboratory Press, Plainview, New York, pp. 14.1ā14.35.
Tiesman, J. and Rizzino, A. (1991) A rapid and reliable method for the purification of high-quality plasmid DNA for double-stranded sequencing. BioTechniques 10, 327ā328.
Barr, P. J., Thayer, R. M., Layborun, P., Najarian, R. C, Seela, F., and Tolan, D. R. (1986) 7-Deaz-2ā²-deoxyguanosine-5ā²-triphosphate: enhanced resolution in M13 dideoxy sequencing. BioTechniques 4, 428ā432.
Ansorge, W., Sproat, B., Stegemann, J., Schwager, C, and Zenke, M. (1987) Automated DNA sequencing: ultrasensitive detection of fluorescent bands during electrophoresis. Nucleic Acids Res. 15, 4593ā4602.
Porber, J. M., Trainor, G. L., Dam, R. J., Hobbs, F. W., Robertson, C. W., Zagursky, R. J., et al. (1987) A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides. Science 238, 336ā341.
Dean, D., Patton, M., and Stephens, R. S. (1991) Direct sequence evaluation of the major outer membrane protein gene variant regions of Chlamydia trachomatis subtypes Dā, Iā, and L2ā. Infect. Immun. 59, 1579ā1582.
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Dean, D. (1999). Genotyping Chlamydia trachomatis by PCR. In: Peeling, R.W., Sparling, P.F. (eds) Sexually Transmitted Diseases. Methods in Molecular Medicineā¢, vol 20. Humana Press. https://doi.org/10.1385/0-89603-535-2:151
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DOI: https://doi.org/10.1385/0-89603-535-2:151
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