Abstract
Hepatitis delta virus (HDV) is an infectious, subviral, pathogen that is associated with a high incidence of fulminant hepatitis in humans. It consists of a closed-circular, single-stranded, RNA genome of about 1700 nucleotides in length that is replicated by a rolling-circle mechanism (reviewed by refs. 1 and 2). There is no DNA intermediate. The infectious genomic strand is a template for an RNA-dependent RNA polymerase (most likely a modified activity of the host’s RNA polymerase II) that generates linear single-stranded multimers of the antigenomic sense. These linear multimers are site-specifically cleaved and ligated to form the closed-circular antigenomic RNAs, which are likewise templates for rolling-circle replication. The linear genomic multimers are also site-specifically cleaved and ligated, and the resulting circular RNAs are subsequently encapsulated to form new infectious particles.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Taylor, J M. (1992) The structure and replication of hepatitis delta virus. Annu. Rev Microbiol 46, 253–276
Lai, M. M. C (1995) The molecular biology of hepatitis delta virus Annu Rev Biochem 64, 259–286
Macnaughton, T B, Wang, Y.-J, and Lai, M M. C (1993) Replication of hepatitis delta virus RNA effect of mutations of the autocatalytic cleavage sites J virol 67, 2228–2234.
Jeng, K.-S., Daniel, A., and Lai, M. M. C. (1996) A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication J virol 70, 2403–2410
Symons, R H (1997) Plant pathogenic RNAs and RNA catalysis Nucleic Acid Res 25, 2683–2689
Symons, R H (1992) Small catalytic RNAs. Annu Rev Biochem 61, 641–671
Diener, T O (1993) The viroid Big punch in a small package Trends Microbiol 1, 289–294
Chowrira, B M, Pavco, P A, and McSwiggen, J A (1994) In vitro and in vivo comparison of hammerhead, hairpin, and hepatitis delta virus self-processing ribozyme cassettes. J virol Chem 269, 25,856–25,864
Calain, P and Roux, L (1993) The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA J Virol 67, 4822–4830
Conzelmann, K-K and Schnell, M (1994) Rescue of synthetic genomic RNA analogs of rabies virus by plasmid-encoded proteins J Virol 68, 713–719
Been, M. D and Wickham, G S (1997) Self-cleaving ribozymes of hepatitis delta virus RNA Eur J Biochem 247, 741–753
Tanner, N K (1995) The catalytic RNAs from hepatitis delta virus structure, function and applications, in Medical Intelligence Unit The Unique Hepatitis Delta virus (Dinter-Gottlieb, G, ed), R G Landes, Austin, pp 11–31
Tanner, N. K, Schaff, S., Thill, G., Petit-Koskas, E, Crain-Denoyelle, A-M, and Westhof, E (1994) A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses Curr biol 4, 488–498
Perrotta, A T and Been, M D (1991) A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA. Nature 350, 434–436
Rosenstein, S. P and Been, M D. (1991) Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures Nucleic Acids Res 19, 5409–5416
Lescure, F, Blumenfeld, M, Thill, G, Vasseur, M, and Tanner, N K. (1993) Trans cleavage of RNA substrates by an HDV-derived ribozyme Prog Clin Biol Res 382, 99–108
Branch, A D, and Robertson, H. D (1991) Efficient trans cleavage and a common structural motif for the ribozymes of the human hepatitis d agent Proc Natl Acad Sci USA 88, 10,163–10,167
Been, M D, Perrotta, A T, and Rosenstein, S. P (1992) Secondary structure of the self-cleaving RNA of hepatitis delta virus: application to catalytic RNA design. Biochemistry 31, 11,843–11,852
Milligan, J. F and Uhlenbeck, O. C (1989) Synthesis of small RNAs using T7 RNA polymerase Methods Enzymol 180, 51–62
Thill, G., Vasseur, M., and Tanner, N. K. (1993) Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme. Biochemistry 32, 4254–4262.
Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd ed, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
Maslak, M and Martin, C. T. (1994) Effects of solution conditions on the steadystate kinetics of initiation of transcription by T7 RNA polymerase Biochemistry 33, 6918–6924.
England, T E., Bruce, A. G, and Uhlenbeck, O C (1980) Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol. 65, 65–79
Perrotta A T. and Been, M D (1992) Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis d virus RNA sequence Biochemistry 31, 16–21
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1998 Humana Press Inc.
About this protocol
Cite this protocol
Tanner, N.K. (1998). Molecular Manipulations of the Catalytic RNAs from the Human Hepatitis Delta Virus. In: Scanlon, K.J. (eds) Therapeutic Applications of Ribozymes. Methods in Molecular Medicine™, vol 11. Springer, Totowa, NJ. https://doi.org/10.1385/0-89603-477-1:29
Download citation
DOI: https://doi.org/10.1385/0-89603-477-1:29
Publisher Name: Springer, Totowa, NJ
Print ISBN: 978-0-89603-477-8
Online ISBN: 978-1-59259-595-2
eBook Packages: Springer Protocols