Skip to main content

Molecular Manipulations of the Catalytic RNAs from the Human Hepatitis Delta Virus

  • Protocol
Therapeutic Applications of Ribozymes

Part of the book series: Methods in Molecular Medicine™ ((MIMM,volume 11))

  • 163 Accesses

Abstract

Hepatitis delta virus (HDV) is an infectious, subviral, pathogen that is associated with a high incidence of fulminant hepatitis in humans. It consists of a closed-circular, single-stranded, RNA genome of about 1700 nucleotides in length that is replicated by a rolling-circle mechanism (reviewed by refs. 1 and 2). There is no DNA intermediate. The infectious genomic strand is a template for an RNA-dependent RNA polymerase (most likely a modified activity of the host’s RNA polymerase II) that generates linear single-stranded multimers of the antigenomic sense. These linear multimers are site-specifically cleaved and ligated to form the closed-circular antigenomic RNAs, which are likewise templates for rolling-circle replication. The linear genomic multimers are also site-specifically cleaved and ligated, and the resulting circular RNAs are subsequently encapsulated to form new infectious particles.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Taylor, J M. (1992) The structure and replication of hepatitis delta virus. Annu. Rev Microbiol 46, 253–276

    Article  PubMed  CAS  Google Scholar 

  2. Lai, M. M. C (1995) The molecular biology of hepatitis delta virus Annu Rev Biochem 64, 259–286

    Article  PubMed  CAS  Google Scholar 

  3. Macnaughton, T B, Wang, Y.-J, and Lai, M M. C (1993) Replication of hepatitis delta virus RNA effect of mutations of the autocatalytic cleavage sites J virol 67, 2228–2234.

    PubMed  CAS  Google Scholar 

  4. Jeng, K.-S., Daniel, A., and Lai, M. M. C. (1996) A pseudoknot ribozyme structure is active in vivo and required for hepatitis delta virus RNA replication J virol 70, 2403–2410

    PubMed  CAS  Google Scholar 

  5. Symons, R H (1997) Plant pathogenic RNAs and RNA catalysis Nucleic Acid Res 25, 2683–2689

    Article  PubMed  CAS  Google Scholar 

  6. Symons, R H (1992) Small catalytic RNAs. Annu Rev Biochem 61, 641–671

    Article  PubMed  CAS  Google Scholar 

  7. Diener, T O (1993) The viroid Big punch in a small package Trends Microbiol 1, 289–294

    Article  PubMed  CAS  Google Scholar 

  8. Chowrira, B M, Pavco, P A, and McSwiggen, J A (1994) In vitro and in vivo comparison of hammerhead, hairpin, and hepatitis delta virus self-processing ribozyme cassettes. J virol Chem 269, 25,856–25,864

    CAS  Google Scholar 

  9. Calain, P and Roux, L (1993) The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA J Virol 67, 4822–4830

    PubMed  CAS  Google Scholar 

  10. Conzelmann, K-K and Schnell, M (1994) Rescue of synthetic genomic RNA analogs of rabies virus by plasmid-encoded proteins J Virol 68, 713–719

    PubMed  CAS  Google Scholar 

  11. Been, M. D and Wickham, G S (1997) Self-cleaving ribozymes of hepatitis delta virus RNA Eur J Biochem 247, 741–753

    Article  PubMed  CAS  Google Scholar 

  12. Tanner, N K (1995) The catalytic RNAs from hepatitis delta virus structure, function and applications, in Medical Intelligence Unit The Unique Hepatitis Delta virus (Dinter-Gottlieb, G, ed), R G Landes, Austin, pp 11–31

    Google Scholar 

  13. Tanner, N. K, Schaff, S., Thill, G., Petit-Koskas, E, Crain-Denoyelle, A-M, and Westhof, E (1994) A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses Curr biol 4, 488–498

    Article  PubMed  CAS  Google Scholar 

  14. Perrotta, A T and Been, M D (1991) A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA. Nature 350, 434–436

    Article  PubMed  CAS  Google Scholar 

  15. Rosenstein, S. P and Been, M D. (1991) Evidence that genomic and antigenomic RNA self-cleaving elements from hepatitis delta virus have similar secondary structures Nucleic Acids Res 19, 5409–5416

    Article  PubMed  CAS  Google Scholar 

  16. Lescure, F, Blumenfeld, M, Thill, G, Vasseur, M, and Tanner, N K. (1993) Trans cleavage of RNA substrates by an HDV-derived ribozyme Prog Clin Biol Res 382, 99–108

    PubMed  CAS  Google Scholar 

  17. Branch, A D, and Robertson, H. D (1991) Efficient trans cleavage and a common structural motif for the ribozymes of the human hepatitis d agent Proc Natl Acad Sci USA 88, 10,163–10,167

    Article  PubMed  CAS  Google Scholar 

  18. Been, M D, Perrotta, A T, and Rosenstein, S. P (1992) Secondary structure of the self-cleaving RNA of hepatitis delta virus: application to catalytic RNA design. Biochemistry 31, 11,843–11,852

    Article  PubMed  CAS  Google Scholar 

  19. Milligan, J. F and Uhlenbeck, O. C (1989) Synthesis of small RNAs using T7 RNA polymerase Methods Enzymol 180, 51–62

    Article  PubMed  CAS  Google Scholar 

  20. Thill, G., Vasseur, M., and Tanner, N. K. (1993) Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme. Biochemistry 32, 4254–4262.

    Article  PubMed  CAS  Google Scholar 

  21. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd ed, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

    Google Scholar 

  22. Maslak, M and Martin, C. T. (1994) Effects of solution conditions on the steadystate kinetics of initiation of transcription by T7 RNA polymerase Biochemistry 33, 6918–6924.

    Article  PubMed  CAS  Google Scholar 

  23. England, T E., Bruce, A. G, and Uhlenbeck, O C (1980) Specific labeling of 3′ termini of RNA with T4 RNA ligase. Methods Enzymol. 65, 65–79

    Article  PubMed  CAS  Google Scholar 

  24. Perrotta A T. and Been, M D (1992) Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis d virus RNA sequence Biochemistry 31, 16–21

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1998 Humana Press Inc.

About this protocol

Cite this protocol

Tanner, N.K. (1998). Molecular Manipulations of the Catalytic RNAs from the Human Hepatitis Delta Virus. In: Scanlon, K.J. (eds) Therapeutic Applications of Ribozymes. Methods in Molecular Medicine™, vol 11. Springer, Totowa, NJ. https://doi.org/10.1385/0-89603-477-1:29

Download citation

  • DOI: https://doi.org/10.1385/0-89603-477-1:29

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-477-8

  • Online ISBN: 978-1-59259-595-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics