Abstract
Fluorescent in situ hybridization (FISH) is a sensitive and powerful method for mapping and positioning DNA sequences in mammalian and other genome systems (1–3). DNA sequences ranging in size from <1 kb to several megabases can be localized to a specific chromosome site. The DNA is first labeled by nick translation with a non-radioactive immunofluorescent compound such as biotin-11-dUTP or digoxigenin-11-dUTP, then hybridized overnight to cell or chromosome preparations. The resulting signal can be detected under ultraviolet light with filters of wavelengths specific to the fluorescent compound.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Lichter, P., Cremer, T., Tang, C.-J. C., Watkins, P. C., and Manuelidis, L. (1988) Rapid detection of human chromosome 21 aberrations by in situ hybridization. Proc. Natl. Acad. Sci. USA 85, 9664–9668.
Singer, R. H., Lawrence, J. B., and Villnave, C. (1986) Optimization of in situ hybridization using isotopic and non-isotopic detection methods. Biotechniques 4, 230.
Pinkel, D., Straume, T., and Gray, J. W. (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc. Natl. Acad. Sci. USA 83, 2934–2938.
Rowley, J. D., Diaz, M. O., Espinosa, R., Patel, Y. D., Van Melle, E., Ziemin, S., Taillon-Miller, P., Lichter, P., Evans, G. A., Kersey, J. H., Ward, D. C., Domer, P. H., and Le Beau, M. M. (1990) Mapping chromosome band 11q23 in human acute leukemia with biotinylated probes: identification of 11q23 translocation breakpoints with a yeast artificial chromosome. Proc. Natl. Acad. Sci. USA 87, 9358–9362.
Lichter, P., Tang, C.-J. C., Call, K., Hermanson, G., Evans, G. A., Housman, D., and Ward, D. C. (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247, 64–69.
Lengauer, C., Henn, T., Onyango, P., Francis, F., Lehrach, H., and Weith, A. (1994) Large-scale isolation of human 1p36-specific P1 clones and then use for fluorescence in situ hybridization. GATA 11, 140–147.
Shi, G., and Cannizzaro, L. A. (1996) Mapping of 29 YAC clones and identification of 3 YACs spanning the translocation t(3,8)(p14.2,q24.1) breakpoint at 8q24.1 in hereditary renal cell carcinoma. Cytogenet. Cell Genet. 75, 180–185.
Tkachuk, D. C., Westbrook, C. A., Andreeff, M., Donlon, T. A., Cleary, M. L., Suryanarayan, K., Homge, M., Redner, A., Gray, J., and Pinkel, D. (1990) Detection of bcr-abl fusion in chronic myelogeneous leukemia by in situ hybridization. Science 250, 559–562.
Poddighe, P. J., Moesker, O., Smeets, D., Awwad, B. H., Ramackers, F. C. S., and Hopman, A. H. N. (1993) Interphase cytogenetics of hematological cancer. Comparison of classical karyotyping and in situ hybridization using a panel of eleven chromosome specific DNA probes. Cancer Res. 51, 1959–1967.
Xing, Y., Johnson, C. V., Dobner, P. R., and Lawrence, J. B. (1993) Higher level organization of individual gene transcription and RNA splicing. Science 259, 1326–1335.
Yokota, H., Van Den Engh, G., Mostert, M., and Trask, B. J. (1995) Treatment of cells with alkaline borate buffer extends the capability of interphase FISH mapping. Genomics 25, 485–491.
Rupa, D. S., Hasegawa, L., and Eastmond, D. A. (1995) Detection of chromosomal breakage in the 1cen-1q12 region of interphase human lymphocytes using multicolor fluorescence in situ hybridization with tandem DNA probes. Cancer Res. 55, 640–645.
Ariyama, T., Inazawa, J., Ezaki, T., Nakamura, Y., Horn, A., and Abe, T. (1995) High-resolution cytogenetic mapping of the short arm of chromosome 1 with newly isolated 411 cosmid markers by fluorescence in situ hybridization. The precise order of 18 markers on 1p36.1 on prophase chromosomes and “stretched” DNAs. Genomics 25, 114–123.
Trask, B., Pinkel, D., and Van Den Engh, G. (1989) The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs. Genomics 5, 710–717.
Lawrence, J. B., Singer, R. H., and McNeil, J. A. (1990) Interphase and metaphase resolution of different distances within the human dystrophin gene. Science 249, 928–932.
Brandriff, B., Gordon, L., and Trask, B. (1991) A new system for high-resolution DNA sequence mapping in interphase pronuclei. Genomics 10, 75–82.
Lawrence, J. B. and Singer, R. H. (1991) Spatial organization of nucleic acid sequences within cells. Sem. Cell Biol. 2, 82–101.
Trask, B. J., Massa, H., Kenwrick, S., and Gitschier, J. (1991) Mapping of human chromosome Xq28 by two-color fluorescence in situ hybridization of DNA sequences to interphase cell nuclei. Am. J. Hum. Genet. 48, 1–15.
Ried, T., Baldini, A., Rand, T. C., and Ward, D. C. (1992) Simultaneous visualization of seven different DNA probes by in situ hybridization using combinatorial fluorescence and digital imaging microscopy. Proc. Natl. Acad. Sci. USA 89, 1388–1392.
Cannizzaro, L. A. and Emanuel, B. (1984) Protocol for G-banding after in situ hybridization. Cytogenet. Cell Genet. 38, 308.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1997 Humana Press Inc., Totowa, NJ
About this protocol
Cite this protocol
Cannizzaro, L.A., Shi, G. (1997). Fluorescent In Situ Hybridization (FISH) for DNA Probes in the Interphase and Metaphase Stages of the Cell Cycle. In: Pollard, J.W., Walker, J.M. (eds) Basic Cell Culture Protocols. Methods in Molecular Biology™, vol 75. Humana Press, Totowa, NJ. https://doi.org/10.1385/0-89603-441-0:313
Download citation
DOI: https://doi.org/10.1385/0-89603-441-0:313
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-0-89603-441-9
Online ISBN: 978-1-59259-561-7
eBook Packages: Springer Protocols