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Whole-Mount In Situ Hybridization in Plants

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Arabidopsis Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 82))

Abstract

Messenger RNA in situ hybridization (ISH) can be defined as a technique for locating specific transcripts. This powerful technique opened the way to study the temporal and spatial patterns of expression of animal and plant genes in a morphological context and on a cell-to-cell basis. Most in situ protocols are based on the hybridtzation of a labeled DNA or RNA probe to tissue sections in which mRNA IS preserved. Radioactive as well as nonradioactive in situ protocols have been applied with success for various tissues originating from plants and animals (15).

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References

  1. Angerer, L M and Angerer, R C. (1981) Detection of poly A+ RNA in sea urchin eggs and embryos by quantitative m situ hybrtdtzation. Nucleic Acids Res 9,2819–2840.

    Article  PubMed  CAS  Google Scholar 

  2. Meyerowitz, E M. (1987) In sztu hybridization to RNA in plant tissue 9Plant MolBzol. Rep. 5, 242–250

    Article  CAS  Google Scholar 

  3. Cox, K. H. and Goldberg, R. B. (1988) Analysis of plant gene expression; inPlant Mo-lecular Bzoloay, A Practrcal Approach (eiShaw,C. H, ed.), IRL, Oxford, UK, pp. 1–35.

    Google Scholar 

  4. Coen, E. S., Romero, J M, Doyle, S., Elliott, R., Murphy, G, and Carpenter, R(1990) floricaula. a homeotic gene required for flower development inAntwrhinum maJus Cell 63, 1311–1322.

    CAS  Google Scholar 

  5. Jackson, D., Veit, B., and Hake, S. (1994) Expression of maize KNOTTED1 related homeobox genes m the shoot apical meristem predicts patterns of in orphogenests in the vegetative shoot. Development 120,405–413.

    CAS  Google Scholar 

  6. Tautz, D and Pfeifle, C. (1989) A non-radioactive in situ hybridization method for the localizatton of specific RNAs in Drosophila embryos reveals translational control of the segmentation genehunchback Chromosoma 98, 81–85.

    Article  CAS  Google Scholar 

  7. Ludevtd, D., Hofte, H., Himelblau, E., and Chrispeels, M. J (1992) The expression pattern of the tonoplast mtrmsic protein y-TIP in Arabidopszs thahana is correlated with cell enlargement Plant Physzol. 100, 1633–1639.

    Article  Google Scholar 

  8. de Almeida Engler, J, Van Montagu, M., and Engler, G. (1994) Whole-mount messenger RNA znsitu hybridization in plants.Plant Mol. Bol. Rep 12,319–329.

    Google Scholar 

  9. Hemerly, A. S., Ferreira, P. C. G., de Almeida Engler, J., Van Montagu, M., Engler, G., and I&, D. (1993) cdc2a expression in Arabzdopszs thaliana is linked wrth competence for cell division Plant Cell 5, 1711–1723

    Article  PubMed  CAS  Google Scholar 

  10. Terryn, N., Brito Arias, M., Engler, G., Tire, C., Villarroel, R., Van Montagu, M.,and Inz C. D. (1993) rhal, a gene encoding a small GTP bmdmg protein from Arabzdopsis prtmarily expressed m developing guard cells. Plant Cell 5, 1761–1769

    Article  PubMed  CAS  Google Scholar 

  11. Palms, B., Goupil, P., de Almeida Engler, J., Van Der Sraeten, D., Van Montagu, M., and Rambour, S. (1996) Evidence for the nitrate-dependent spatial regualtion of the nitrate reductase gene in chicory roots. Planta 200, 20–27.

    Article  PubMed  CAS  Google Scholar 

  12. Dickson, M. C., Slager, H. G., Duftie, E., Mummery, C. L., and Akburst, R. J (1993) RNA and protein localisations of TGFP2 in the early mouse embryo suggest an involvement in cardiac development. Development 117, 625–639

    Google Scholar 

  13. Wilkinson, D.G. (1993) Whole mount in sztu hybridrzatton of vertebrate embryos, in In situ Hybrzdzzatzon A Practzcal Approach (Wilkinson, D G , ed.), IRL, Oxford, UK, pp. 75–83.

    Google Scholar 

  14. Cox, K., DeLeon, D. V., Angerer, L. M., and Angerer, R. C. (1984) Detection of in RNAs in sea urchin embryos by znsztu hybridization using asymmetric RNA probes. Dev Biol 101,485–502.

    Article  PubMed  CAS  Google Scholar 

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© 1998 Human press Inc, Totowa, NJ

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Engler, J.d.A., Montagu, M.V., Engler, G. (1998). Whole-Mount In Situ Hybridization in Plants. In: Martinez-Zapater, J.M., Salinas, J. (eds) Arabidopsis Protocols. Methods in Molecular Biology™, vol 82. Humana Press. https://doi.org/10.1385/0-89603-391-0:373

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  • DOI: https://doi.org/10.1385/0-89603-391-0:373

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-391-7

  • Online ISBN: 978-1-59259-268-5

  • eBook Packages: Springer Protocols

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