Skip to main content

Selection of Fast-Hybridizing Complementary RNA Species In Vitro

  • Protocol
Ribozyme Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 74))

Abstract

For naturally occurring antisense-regulated systems, it has been found that the rate for the association of complementary RNA strands in vitro reflects the biological effectiveness of the antisense RNA in vivo (1). Recently, a similar correlation has been identified for artificial HIV-1-directed antisense RNA in human cells (2). In the case of ribozymes, i.e., molecules that first bind their target via complementary sequences and, subsequently, hydrolyze the cleavable motif, it is reasonable to assume that the biological effectiveness in living cells is influenced by the ability of fast association as well. Thus, one could conclude that the identification of fast-hybridizing ribozyme species supports the search for biologically effective ones.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Wagner, E. G. W. and Simons, R. W. (1994) Antisense RNA control in bacteria, phage and plasmids. Annu. Rev. Microbiol. 48, 713–740.

    Article  PubMed  CAS  Google Scholar 

  2. Rittner, K., Burmester, C., and Sczakiel, G. (1993) In vitro selection of fast-hybridizing and effective antisense RNAs directed against the human immunodeficiency virus type 1. Nucleic Acids Res. 21, 1381–1387.

    Article  PubMed  CAS  Google Scholar 

  3. Tabler, M., Homann, M., Tzortzakaki, S., and Sczakiel, G. (1994) A three-nucleotide helix I is sufficient for full activity of a hammerhead ribozyme: advantages of an asymmetric design. Nucleic Acids Res. 22, 3958–3965.

    Article  PubMed  CAS  Google Scholar 

  4. Sambrook, J., Fritsch, E. F., and Maniatis T. (1989) Molecular Cloning: a Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  5. Barrio, J. R., Barrio, M. C., Leonard, N. J., England, T. E., and Uhlenbeck O. C. (1978) Synthesis of modified nucleoside 3′,5′-biphosphates and their incorporation into oligoribonucleotides with T4 RNA ligase. Biochemistry 17, 2077–2081.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1997 Humana Press Inc.

About this protocol

Cite this protocol

Kronenwett, R., Sczakiel, G. (1997). Selection of Fast-Hybridizing Complementary RNA Species In Vitro. In: Turner, P.C. (eds) Ribozyme Protocols. Methods in Molecular Biology™, vol 74. Humana Press. https://doi.org/10.1385/0-89603-389-9:281

Download citation

  • DOI: https://doi.org/10.1385/0-89603-389-9:281

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-389-4

  • Online ISBN: 978-1-59259-560-0

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics