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Single-Strand Conformational Polymorphism (SSCP) for the Identification of Endomycorrhizal Fungi

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Species Diagnostics Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 50))

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Abstract

Among the different methods devised to detect genetic polymorphisms, the analysis of single-strand conformation is simple and yet exquisitely sensitive (15). It has been reported that even single base substitution can be detected between DNA fragments ranging in size from 100–450 bp (3). Coupled with PCR amplification, SSCP analysis can be used to rapidly identify variants of a defined DNA segment, without relying on prior knowledge of their DNA sequences.

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References

  1. Ainsworth, P. J., Surh, L. C., and Coulter-Mackie, M. B. (1991) Diagnostic single strand conformational polymorphism, (SSCP): a simplified non-radioisotopic method as applied to a Tay-Sachs B1 variant. Nucleic Acids Res 19(2), 405,406.

    Article  PubMed  CAS  Google Scholar 

  2. Dockhorn-Dworniczak, B., Dworniczak, B., Brommelkamp, L., Bulles, J., Horst, J., and Backer, W. W. (1991) Non-isotopic detection of single strand conformation polymorphism (PCR-SSCP): a rapid and sensitive technique in diagnosis of phenylketonuria Nucleic Acids Res 19(9), 2500.

    Article  PubMed  CAS  Google Scholar 

  3. Hayashi, K. (1991) PCR-SSCP: A simple and sensitive method for detection of mutations in the genomic DNA. PCR Methods Appl 1, 34–38.

    PubMed  CAS  Google Scholar 

  4. Makino, R., Yazyu, H., Kishimoto, Y., Sekiya, T., and Hayashi, K. (1992) F-SSCP: Fluorescence-based polymerase chain reaction—single-strand conformation polymorphism (PCR-SSCP) analysis. PCR Methods Appl 2(1), 10–13.

    PubMed  CAS  Google Scholar 

  5. Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K., and Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphism. Proc Natl. Acad. of Set USA 86, 2766–2770.

    Article  CAS  Google Scholar 

  6. Simon, L., Bousquet, J., Lévesque, R. C., and Lalonde, M. (1993) Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants. Nature 363 (6 May), 67–69.

    Article  Google Scholar 

  7. Simon, L., Lalonde, M., and Bruns, T. D. (1992) Specific amplification of 18S fungal ribosomal genes from vesicular-arbuscular endomycorrhizal fungi colonizing roots. Appl. Enwon Microbiol. 58(1), 291–295.

    CAS  Google Scholar 

  8. Simon, L., Lévesque, R. C., and Lalonde, M. (1992) Rapid quantitation by PCR of endomycorrhizal fungi colonizing roots. PCR Methods Appl 2, 76–80.

    PubMed  CAS  Google Scholar 

  9. Simon, L., Lévesque, R. C., and Lalonde, M. (1993) Identification of endomycorrhizal fungi colonizing roots using fluorescent SSCP-PCR Appl Environ. Microbiol. 59(12), 4211–4215.

    PubMed  CAS  Google Scholar 

  10. Giusti, W. G. and Adriano, T. (1993) Synthesis and characterization of 5′-fluorescent-dye-labelled oligonucleotides. PCR Methods Appl. 2, 223–227.

    PubMed  CAS  Google Scholar 

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© 1996 Humana Press Inc.

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Simon, L. (1996). Single-Strand Conformational Polymorphism (SSCP) for the Identification of Endomycorrhizal Fungi. In: Clapp, J.P. (eds) Species Diagnostics Protocols. Methods in Molecular Biology™, vol 50. Humana Press. https://doi.org/10.1385/0-89603-323-6:193

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  • DOI: https://doi.org/10.1385/0-89603-323-6:193

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-323-8

  • Online ISBN: 978-1-59259-537-2

  • eBook Packages: Springer Protocols

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