Skip to main content

Generation of Large Insert YAC Libraries

  • Protocol
  • 337 Accesses

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 54))

Abstract

The introduction of yeast artificial chromosomes (YACs) as cloning vectors in 1987 has significantly advanced the analysis of complex genomes (1). The capability of cloning large DNA (100–2000 kb) as YACs has accelerated the construction of physical maps and contig building (a contiguous set of overlapping clones). YAC contigs now cover entire human chromosomes (i.e., Y and 21) (2,3) and small genomes (i.e., Schizosaccharomyces pombe) (4), and large YAC contigs cover much of the human genome (5). The main advantages of YACs over prokaryotic-based cloning systems are their large insert capacity and ability to maintain sequences that are unstable or not well represented in bacteriophage or cosmid genomic libraries (6). Therefore, YACs complement existing cloning vectors (cosmids, bacteriophage) and new cloning vectors (P1 bacteriophage [P1], bacterial artificial chromosomes [BACs], and P1-derived artificial chromosomes [PACs]; for review, see ref. 7) in mapping and chromosome walking projects (6, 8).

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   74.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Burke, D. T., Carle, G. F., and Olson, M. V. (1987) Cloning of large DNA segments of exogenous DNA into yeast by means of artificial chromosome vectors Science 236, 806–812.

    Article  PubMed  CAS  Google Scholar 

  2. Foote, S., Vollrath, D., Hilton, A., and Page, D. C. (1992) The human Y chromosome overlapping DNA clones spanning the euchromatic region Science 258, 60–66.

    Article  PubMed  CAS  Google Scholar 

  3. Chumakov, I., Rigault, P., Guillou, S., Ougen, P., Billaut, A., Guasconi, G., et al (1992) Continuum of overlapping clones spanning the entire human chromosome 21q. Nature 359, 380–387.

    Article  PubMed  CAS  Google Scholar 

  4. Maier, E., Howeisel, J., McCarthy, L., Mott, R., Grigoriev, A. P., Monaco, A. P., Larin, Z., and Lehrach, H. (1992) Complete coverage of the Schizosaccharomyces pombe genome in yeast artificial chromosomes. Nature Genet. 1, 273–297.

    Article  PubMed  CAS  Google Scholar 

  5. Cohen, D., Chumakov, I., and Weissenbach, J. (1993) A first-generation physical map of the human genome. Nature 366, 698–701.

    Article  PubMed  CAS  Google Scholar 

  6. Coulson, A., Waterston, R., Kiff, J., Sulston, J., and Kohara, Y. (1988) Genome linking with yeast artificial chromosomes Nature 335, 184–186.

    Article  PubMed  CAS  Google Scholar 

  7. Monaco, A. P. and Larin, Z. (1994) YACs, BACs, PACs and MACs artificial chromosomes as research tools Trends Biotechnol. 12, 280–286.

    Article  PubMed  CAS  Google Scholar 

  8. Garza, D., Ajioka, J. W., Burke, D. T., and Hartl, D. L. (1989) Mapping the Drosophila genome with yeast artificial chromosomes. Science 246, 641–646.

    Article  PubMed  CAS  Google Scholar 

  9. Guzman, P. and Ecker, J. (1988) Development of large DNA methods for plants, molecular cloning of large segments of Arabidopsis and carrot DNA into yeast. Nucleic Acids Res. 16, 11,091–11,105.

    Article  PubMed  CAS  Google Scholar 

  10. Larin, Z., Monaco, A. P., and Lehrach, H. (1991) Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88, 4123–4127.

    Article  PubMed  CAS  Google Scholar 

  11. Burke, D. T., Rossi, J. M., Leung, J., Koos, D. S., and Tilghman, S. M. (1991) A mouse genomic library of yeast artificial chromosome clones Mammal Genome 1, 65.

    Article  CAS  Google Scholar 

  12. Anand, R., Villasante, A., and Tyler-Smith, C. (1989) Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed-field gel electrophoresis. Nucleic Acids Res. 17, 3425–3433.

    Article  PubMed  CAS  Google Scholar 

  13. Albertsen, H. M., Abderrahim, H., Cann, H. C., Dausset, J., Le Paslier, D., and Cohen, D. (1990) Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents Proc. Natl. Acad. Sci. USA 87, 5109–5113.

    Article  Google Scholar 

  14. Reeves, R. H., Pavan, W. J., and Hieter, P. (1992) Yeast artificial chromosome modification and manipulation, in Methods in Enzymology, vol. 216 (Wu, R., ed.), Humana, Totowa, NJ, pp. 584–603.

    Google Scholar 

  15. Chartier, F. L., Keer, J. T., Sutcliffe, M. J., Henriques, D. A., Mileham, P., and Brown, S. D. M. (1992) Construction of a mouse yeast artificial chromosome library in a recombinant-deficient strain. Nature Genet 1, 132–136.

    Article  PubMed  CAS  Google Scholar 

  16. Neil, D. L., Villasante, A., Fisher, R. B., Vetrie, D., Cox, B., and Tyler-Smtth, C. (1990) Complete coverage of the Schizosaccharomyces pombe genome in yeast artificial chromosomes. Nucleic Acids Res. 18, 421–428.

    Article  Google Scholar 

  17. Ling, L. L., Ma, N. S-F., Smith, D. R., Miller, D. D., and Moir, D. T. (1993) Reduced occurrence of chimeric YACs in recombinant deficient hosts. Nucleic Acids Res. 21, 6045,6046.

    Article  PubMed  CAS  Google Scholar 

  18. Smith, D. R., Smyth, A. P., and Moir, D. T. (1992) Copy number amplification of yeast artificial chromosomes, in Methods in Enzymology, vol 216 (Wu, R., ed.), Humana, Totowa, NJ, pp 603–614.

    Google Scholar 

  19. McCormick, M. K., Shero, J. H., Cheung, M. C., Kan, Y. W., Hieter, P A., and Antonarakis, S. E. (1989) Construction of human chromosome 21-specific yeast artificial chromosomes Proc. Natl. Acad. Sci. USA 86, 9991–9995.

    Article  PubMed  CAS  Google Scholar 

  20. Lee, J. T., Murgia, A., Sosnoski, D. M., Olivos, I. M., and Nussbaum, R. L. (1992) Construction and characterisation of a yeast artificial chromosome library for Xpter-Xq27. 3: a systematic determination of cocloning rate and X-chromosome representation. Genomics 12, 526–533.

    Article  PubMed  CAS  Google Scholar 

  21. Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982) Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

    Google Scholar 

  22. Herrmann, B. G., Barlow, D. P., and Lehrach, H. (1987) An inverted duplication of more than 650 Kbp in mouse chromosome 17 mediates unequal but homologous recombination between chromosomes heterozygous for a large inversion. Cell 48, 813–825.

    Article  PubMed  CAS  Google Scholar 

  23. Rothstein, R. (1985) Cloning in yeast, in DNA Cloning Volume II (Glover, D. M., ed.), IRL Press, Oxford, UK, pp. 45–65.

    Google Scholar 

  24. Burgers, P. M. J. and Percival, K. J. (1987) Transformation of yeast spheroplasts without cell fusion. Anal. Biochem. 163, 391–397.

    Article  PubMed  CAS  Google Scholar 

  25. Hieter, P., Mann, C., Snyder, M., and Davis, R. W. (1985) Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell 40, 381–392.

    Article  PubMed  CAS  Google Scholar 

  26. Green, E. D. and Olson, M. V. (1990) Systematic screening of yeast artificial chromosome libraries by use of the polymerase chain reaction Proc. Natl. Acad. Sci. USA 87, 1213–1217.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1996 Humana Press Inc.

About this protocol

Cite this protocol

Larin, Z., Monaco, A.P., Lehrach, H. (1996). Generation of Large Insert YAC Libraries. In: Markie, D. (eds) YAC Protocols. Methods in Molecular Biology™, vol 54. Humana Press. https://doi.org/10.1385/0-89603-313-9:1

Download citation

  • DOI: https://doi.org/10.1385/0-89603-313-9:1

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-313-9

  • Online ISBN: 978-1-59259-541-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics