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Part of the book series: Methods in Molecular Biology ((MIMB,volume 37))

Abstract

Promoter-specific in vitro transcription by RNA polymerase II is now achievable with cell extracts prepared from a variety of animal and plant sources (13). For extracts prepared from mammalian cells, HeLa cells provide many advantages. Large quantities of homogeneous cells can be grown in spinner flasks at a cost below that of many other mammalian tissue-culture cells. A second advantage of HeLa extracts is the low level of RNases, proteases, and other nonspecific inhibitory activities. This results in a long shelf life (indefinitely at −70°C, <24 h at 4°C). The third advantage is that initiation factors from HeLa cells are well characterized, and many of them are available in recombinant form (410).

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References

  1. Dignam, J. D., Lebovitz, R. M., and Roeder, R. G. (1983) Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammahan nuclei. Nucleic Acids Res. 11, 1475–1489.

    Article  PubMed  CAS  Google Scholar 

  2. Kelleher, R. J., III, Flanagan, P. M., and Kornberg, R. D (1990) A novel mediator between activator proteins and the RNA polymerase II transcription apparatus. Cell 61, 1209–1215.

    Article  PubMed  CAS  Google Scholar 

  3. Biggin, M. D. and Tjian, R. (1988) Transcription factors that activate the Ultrabithorax promoter m developmentally staged extracts. Cell 53, 699–711.

    Article  PubMed  CAS  Google Scholar 

  4. Peterson, M. G., Inostroza, J., Maxon, M. E., Flores, O., Admon, A., Reinberg, D., and Tjian, R. (1991) Primary structure and functional properties of recombinant human transcription factor TFIIE. Nature 354, 369–373.

    Article  PubMed  CAS  Google Scholar 

  5. Peterson, M. G., Tanese, N., Pugh, B. F., and Tjian, R. (1990) Functional domains and upstream activation properties of cloned human TATA-binding protein. Science 248, 1625–1630.

    Article  PubMed  CAS  Google Scholar 

  6. Kao, C. C., Lieberman, P. M., Schmidt, M. C., Zhou, Q., Pei, R., and Berk, A. J. (1990) Cloning of a transcriptionally active human TATA-binding factor. Science 248, 1646–1650.

    Article  PubMed  CAS  Google Scholar 

  7. Hoffmann, A., Sinn, E., Yamamoto, T., Wang, J., Roy, A., Horikoshi, M., and Roeder, R. G. (1990) Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID). Nature 346, 387–390.

    Article  CAS  Google Scholar 

  8. Ha, I., Lane, W. S., and Reinberg, D. (1991) Cloning and structure of a human gene encoding the general transcription initiation factor IIB. Nature 352, 689–694.

    Article  PubMed  CAS  Google Scholar 

  9. Sopta, M., Burton, Z. F., and Greenblatt, J. (1989) Structure and associated DNA-helicase activity of a general transcription initiation factor that binds to RNA polymerase II. Nature 341, 410–414.

    Article  PubMed  CAS  Google Scholar 

  10. Finkelstein, A., Kostrub, C. F., Li, J., Chavez, D. P., Wang, B. Q., Fang, S. M., Greenblatt, J., and Burton, Z. F. (1992) A cDNA encoding RAP74, a general initiation factor for transcription by RNA polymerase II. Nature 355, 464–467.

    Article  PubMed  CAS  Google Scholar 

  11. Nakajima, N., Horikoshi, M., and Roeder, R. G. (1988) Factors involved in specific transcription by mammalian RNA polymerase II: purification, genetic specificity, and TATA box-promoter interactions of TFIID. Mol. Cell. Biol. 8, 4028–4040.

    PubMed  CAS  Google Scholar 

  12. Jackson, S. P. and Tjian, R. (1988) O-Glycosylation of eukaryotic transcription factors: implications for mechanisms of transcriptional regulation, Cell 55, 125–133.

    Article  PubMed  CAS  Google Scholar 

  13. Jackson, S. P. and Tjian, R. (1989) Purification and analysis of RNA polymerase II transcription factors by using wheat-germ agglutinin affinity chromatography. Proc. Natl. Acad. Sci. USA 86, 1781–1785.

    Article  PubMed  CAS  Google Scholar 

  14. Carey, M., Leatherwood, J., and Ptashne, M. (1990) A potent GAL4 derivative activates transcription at a distance in vitro. Science 247, 710–712.

    Article  PubMed  CAS  Google Scholar 

  15. Pugh, B. F. and Tjian, B. F. (1991) Transcription from a TATA-less promoter requires a multisubunit TFIID complex. Genes Devel. 5, 1935–1945.

    Article  PubMed  CAS  Google Scholar 

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© 1995 Humana Press Inc.

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Pugh, B.F. (1995). Preparation of HeLa Nuclear Extracts. In: Tymms, M.J. (eds) In Vitro Transcription and Translation Protocols. Methods in Molecular Biology, vol 37. Humana Press. https://doi.org/10.1385/0-89603-288-4:349

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  • DOI: https://doi.org/10.1385/0-89603-288-4:349

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-288-0

  • Online ISBN: 978-1-59259-524-2

  • eBook Packages: Springer Protocols

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