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Staden: Searching for Motifs in Protein Sequences

  • Protocol
Computer Analysis of Sequence Data

Part of the book series: Methods in Molecular Biology ((MIMB,volume 25))

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Abstract

The program PIP contains several ways of defining and searching for motifs (1,2). Searches for exact matches and percentage matches, the use of score matrices, and the creation and use of weight matrices are described here. All of the searches produce both listed and graphical output.

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References

  1. Staden, R. (1988) Methods to define and locate patterns of motifs in sequences. CABIOS 4(1), 53–60.

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  2. Staden, R. (1990) Searching for patterns in protein and nucleic acid sequences, in Methods in Enzymology, vol. 183 (Doolittle, R F, ed.), Academic, New York, pp. 193–211.

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Author information

Authors and Affiliations

  1. MRC Laboratory of Molecular Biology, Cambridge, UK

    Rodger Staden

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  1. Rodger Staden
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© 1994 Human Press Inc, Totowa, NJ

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Staden, R. (1994). Staden: Searching for Motifs in Protein Sequences. In: Computer Analysis of Sequence Data. Methods in Molecular Biology, vol 25. Springer, Totowa, NJ. https://doi.org/10.1385/0-89603-276-0:131

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  • DOI: https://doi.org/10.1385/0-89603-276-0:131

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-276-7

  • Online ISBN: 978-1-59259-512-9

  • eBook Packages: Springer Protocols

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