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Site-Directed and Site-Saturation Mutagenesis Using Oligonucleotide Primers

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DNA-Protein Interactions

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 30))

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Abstract

A very powerful method of probing DNA-protein interactions is the technique of site-directed mutagenesis. Using this approach one can introduce specific amino acid changes at any given position in the amino acid sequence of a DNA-binding protein, and test the functional consequences of these mutations in vitro. Furthermore, it is also possible to investigate the resulting mutations in vivo if a suitable phenotypic change can be measured. If so, strategies that introduce random base changes to a given codon (or indeed to a larger region of the protein) are particularly valuable.

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References

  1. Hutchison, C. A., Phllhps, S, Edgell, M., Gillam, S., Jahnke, P., and Smith, M. (1978) Mutagenesis at a specific position in a DNA sequence. J. Biol. Chem. 18,6551–6560.

    Google Scholar 

  2. Kunkel, T. A. (1985) Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA 82,488–492

    Article  PubMed  CAS  Google Scholar 

  3. Taylor, J. W., Ott, J., and Eckstein, F. (1985) The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA. Nucleic Acids Res 13, 8765–8785.

    Article  PubMed  CAS  Google Scholar 

  4. Alber, T, Bell, J A., Dao-Pin, S., Nicholson, H, Wozniak, J A., Cook, S., and Matthews, B W (1988) Replacements of Pro86 in phage T4 lysozyme extend an a-helix but do not alter the protein stability. Science 239,631–635.

    Article  PubMed  CAS  Google Scholar 

  5. Zabin, H. B. and Terwilliger, T. C. (1991) Isolation and in vitro characterisation of temperature sensitive mutants of the bacteriophage fl gene V protein. J. Mol. Biol. 279,257–275.

    Article  Google Scholar 

  6. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.

    Google Scholar 

  7. Taylor, J. W., Schmidt, W., Costick, R., Okrusek, A., and Eckstein, F. (1985) The use of phosphorothioate-modified DNA in restriction enzyme reactions to prepare nicked DNA. Nucleic Acids Res 13,8749–8764.

    Article  PubMed  CAS  Google Scholar 

  8. Nakayame, K. L. and Eckstein, F. (1986) Inhibition of restriction endonuclease Nci I cleavage by phosphorothioate groups and its application to oligonucleotide directed mutagenesis. Nucleic Acids Res. 14,9679–9698.

    Article  Google Scholar 

  9. Sayers, J. R., Schmidt, W., and Eckstein, F. (1988) 5′-3′ exonucleases m phosphorothioate-based oligonucleotide-directed mutagensis. Nucleic Acids Res 16,791–802.

    Article  PubMed  CAS  Google Scholar 

  10. Hermes, J. D., Parekh, S. M., Blacklow, S. C., Koster, H., and Knowles, J. R.(1989) A reliable method for random mutagenesis. the generation of mutant libraries using spiked oligonucleotide primers. Gene 84, 143–151.

    Article  PubMed  CAS  Google Scholar 

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© 1994 Humana Press Inc.

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O’Donohue, M.J., GeoffKneale, G. (1994). Site-Directed and Site-Saturation Mutagenesis Using Oligonucleotide Primers. In: Geoff Kneale, G. (eds) DNA-Protein Interactions. Methods in Molecular Biology™, vol 30. Humana Press. https://doi.org/10.1385/0-89603-256-6:211

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  • DOI: https://doi.org/10.1385/0-89603-256-6:211

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-256-9

  • Online ISBN: 978-1-59259-517-4

  • eBook Packages: Springer Protocols

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