Abstract
The dideoxy chain-termination method of DNA sequence analysis involves the synthesis of a DNA strand from a single-stranded template (1). The enzymatic synthesis is initiated at the site where an oligonucleotide primer anneals to the template. The most consistently satisfactory sequencing results are probably obtained by using bacteriophage M13 (2,3) or phagemid (4) single-stranded DNA as the template. However, plasmid DNA that has been denatured can also serve as satisfactory template DNA. It is particularly important when preparing plasmid DNA for sequencing to give the utmost care and attention to the DNA isolation and purification techniques. Most problems that occur with plasmid sequencing are related to poor quality template.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Sanger, F, Nlcklen, S., and Coulson, A. R. (1977) DNA sequencing with chamtermmating inhibitors. Proc Nat1 Acad. Sci. USA 74, 5463–5467.
Messing, J, Gronenborn, B, Muller-Hill, B, and Hofschnelder, P H (1977) Filamentous coliphage Ml3 as a cloning vehicle: Insertion of a Hind111 fragment of the lac regulatory region in Ml3 replicative form in vitro Proc Nat1 Acad SCL USA 74, 3642–3646
Messing, J. (1983) New Ml3 vectors for cloning. Meth. Enzymol. 101, 20–78
Zagursky, R J. and Berman, M. L. (1984) Cloning vectors that yield high levels of single-stranded DNA for rapid DNA sequencing. Gene 27, 183–191.
Sambrook, J., Fritsch, E. F, and Maniatis, T (1989) Molecular Cloning-A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
Birnboim, H. C. and Doly, J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 1513–1523
Vogelstein, B. and Gillespie, D. (1979). Preparation and analytical purrfrcatron of DNA from agarose Proc Natl. Acad Sci USA 76, 615–619.
Vieira, J. and Messing, J. (1982) The pUC plasmids, an Ml3 mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19, 259–268.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1993 Humana Press Inc. Totowa, New Jersey
About this protocol
Cite this protocol
Griffin, H.G., Griffin, A.M. (1993). Plasmid Sequencing. In: Griffin, H.G., Griffin, A.M. (eds) DNA Sequencing Protocols. Methods in Molecular Biology™, vol 23. Humana Press. https://doi.org/10.1385/0-89603-248-5:131
Download citation
DOI: https://doi.org/10.1385/0-89603-248-5:131
Publisher Name: Humana Press
Print ISBN: 978-0-89603-248-4
Online ISBN: 978-1-59259-510-5
eBook Packages: Springer Protocols