Skip to main content

In Situ Hybridization Histochemistry Using Alkaline Phosphatase-Labeled Oligodeoxynucleotide Probe

  • Protocol
Protocols in Molecular Neurobiology

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 13))

  • 1810 Accesses

Abstract

Recent progress in the field of molecular biology has provided a new method to localize an mRNA signal within a cell or tissue section. This technique, called “in situ hybridization histochemistry,” gives us dynamic information about gene expression at individual cellular lev- els. For the detection of a particular target mRNA, a specific probe that has complementary sequence to the target mRNA is used. This probe has to include a reporter molecules in order to visualize the position of the probe-mRNA hybrid on a tissue section (1). Conven- tional in situ hybridization procedures use radioisotopes (e.g., 3H, 35S, 32P) as reporter molecules that can be visualized by autoradiography after hybridization (24). The use of autoradiography, both film auto- radiography and emulsion autoradiography, restricts the wide appli- cation of this method because of the following reasons.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Haralambidis, J., Chai, M., and Treger, G. W. (1987) Preparation of basemodified nucleoudes suitable for non-radioactive label attachment and therr incorporauon into synthetic oligodeoxy ribonucleic acids. Nuclex Aczds Res. 15, 4875–4876.

    Google Scholar 

  2. Keller, G. H. and Manak, M. M. (1989) DNA Probes. Macmillan, New York.

    Google Scholar 

  3. Polak, J. M. and Mcgee, J. O’D. (1990) In Sztu Hybridization Principles and Ructzce. Oxford Umversity Press, Oxford, UK.

    Google Scholar 

  4. Uhl, G. R. (1986) In Situ Hybnduatzmzn m Bruin, Plenum, New York.

    Google Scholar 

  5. Tchen, P., Fuchs, R. P. P., Sage, E., and Leng, M. (1984) Chemically modified nucleic acids imununodetectable probes in hybridization experiments. Proc. Natl. Acad. Sci. USA 81, 3466–3470.

    Article  PubMed  CAS  Google Scholar 

  6. Landegent, J. E., Jansen in de Wal, N., Baan, R. A., HoeiJmakers, J. H. J., and Van der Ploeg, M. (1984) 2-Acetylammo fluoren modified probes for the indirect hybridcytochemical detection of specific nucleic acids sequence. Exp. CM Res. 153, 61–72.

    Article  CAS  Google Scholar 

  7. Langer, P. R., Waldrop, A. A., and Ward D. C. (1981) Enzymatic synthesis of biotin labelled polynucleotides: novel nucleic acid afhnity probes. Proc. Natl. Acad. Sci. USA 78, 6633–6637.

    Article  PubMed  CAS  Google Scholar 

  8. Leary, J. L., Brigati, D.J., and Ward, D. C. (1983) Rapid and sensitive colorimetric method for visualizing biotin-labelled DNA probes hybridization to DNA or RNA immobilized on nitrocellulose: bio-blots. Proc. Natl. Acad. sα. USA 80, 4045–4049.

    Article  CAS  Google Scholar 

  9. Agrawal, S., Christodoulou, C., and Gait, M.J. (1986) Efficient methods for attaching non-radioactive labels to 5’ ends of synthetic oligodeoxyribonucleoudes. Nucleic Acids Res. 14, 6227–6245.

    Article  PubMed  CAS  Google Scholar 

  10. Foster, A. C., McInnes, J. L., Skingle, D. C., and Symons, R. H. (1985) Nonradioactive hybridization probes prepared by chemical labelling of DNA and RNA with a novel reagent photobiotin. Nucleic Acids Res. 13, 745–761.

    Article  Google Scholar 

  11. Heiles, B.J., Genersch, E., Kessler, C., Neumann, R., and Eggers, H.J. (1988) In situ hybridization with digoxigenin-labelled DNA of human papillo maviruses (HPV 16/18) on Hela and Sila cells. Biotechnique 6, 978–981.

    CAS  Google Scholar 

  12. Shroyer, K. R. and Nakane, P. K (1983) Use of DNP-labelled cDNA in in situ hybridization. J. Cell Biol. 97, 377a.

    Google Scholar 

  13. Keller, G. H., Huang, D. P., and Manak, M. M. (1989) Labelling of DNA probes with a photoactivatable hapten. Anal. Biochem. 177, 392–395.

    Article  PubMed  CAS  Google Scholar 

  14. Keller, G. H., Cumming, C. U., Huang, D. P., Mannak, M. M., and Ting, R. (1988) A chemical method introducing hapten onto DNA probes. Anal Biochem. 170, 441–450.

    Article  PubMed  CAS  Google Scholar 

  15. Dale, R. K. M. and Ward, D. C. (1975) Mercurated polynucleotides: new probes for hybridization and selective selective polymer fractionation. Biochemistry 14, 2458–2469.

    Article  PubMed  CAS  Google Scholar 

  16. Hopman, A. H. N., Wiegant, J., Tesser, G. I., and VanDuijn, P. (1986) A non-radioactive in situ hybridization method based on mercurated nucleic acids probes and sulphydryl-hapten ligands. Nucleic Aids Res. 14, 6471–6488.

    Article  CAS  Google Scholar 

  17. Sverdlov, E. D., Monastyrskaya, G. S., Guskova, L. I., Levitan, T. L., Sheishenko, V. J., and Bukowsky, E. J.(1974) Modification of the cytidine residues with a bisulfite-O-methyl hydroxylamine mixture. Biochem. Biophys. Acta 340, 153.

    CAS  Google Scholar 

  18. Poverenny, A. M., Podgorodnichenko, V. K., Bryksina, L. E., Monastyrskaya, G. S., and Sverdolov, E. D. (1979) Immunochemical approaches to DNA structure investigation I. Mol. Immunol. 16, 313–316.

    Article  PubMed  CAS  Google Scholar 

  19. Smith, L. M., Fung, S., Hunkapiller, M. W., Hunkapiller, T. J. and Hood, L. E. (1985) The synthesis of oligonucleotides containing an aliphatic amino group at 5’ terminus: synthesis of fluorescent DNA primers for use in DNA sequence analysis. Nucleic Acids Res. 13, 2399–2412.

    Article  PubMed  CAS  Google Scholar 

  20. Ruth, J., Morgan, C., and Paska, A. (1985) Linker arm nucleotide analogs useful m ohigonucleotide synthesis. DNA 4, 93.

    Google Scholar 

  21. Jablonski, E., Moomaw, E. W., Tullis, R. H., and Ruth, J. (1986) Preparation of oligodeoxynucleotide alkaline phosphatase conjugates and their use as hybridization probe. Nuchc Acids Res. 14, 6115–6128.

    Article  CAS  Google Scholar 

  22. Li, P., Moden, P., Skingle, D. C., Lanser, J. A., and Symons, R. H. (1987) Enzyme linked synthetic oligonucleotide probes nonradioactive detection of Escherichia coli in fecal specimens. Nucleic Acids Res. 15, 5275–5287.

    Article  PubMed  CAS  Google Scholar 

  23. Chu, E. C. F. and Orgel, L. E. (1988) Ligation of oligonucleotides to nucleic acids or protem via disulfide bonds. Nucleic Acids Res. 16, 3671–3691.

    Article  PubMed  CAS  Google Scholar 

  24. Urdea, M. S., Wamner, B. D., Running, J. A., Stempien, M., Clyne, J., and Horn, T. (1988) A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme-labelled synthetic oligodeoxynucleotide probes. Nucleic Acid Res. 16, 4937–4956.

    Article  PubMed  CAS  Google Scholar 

  25. Kiyama H. and Emson P. C. (1990) Evidence for the coexpression of oxyto cin and vasopressin mRNAs in magnocellular neurosecretoly cells: simultaneous demonstration of two neurohypophysin mRNAs by hybridization histochemistry. J. Neuromdoninol. 2, 257–25

    Google Scholar 

  26. kiyama, H., Emson, P. C., Ruth, J., and Morgan, C. (1990) Sensitive nonradioactive in situ hybridization histochemistry: demonstration of tyrosine hydroxylase gene expression in rat brain and adrenal. Mol. Brain Res. 7, 213–219.

    Article  PubMed  CAS  Google Scholar 

  27. Kiyama, H., Emson, P. C., and Tohyama M. (1990) Recent progress in the use of the technique of non-radioactive in situ hybridization histochemis try: new tools for molecular neurobiology. Neurosci. Res. 9, 1–21.

    Article  PubMed  CAS  Google Scholar 

  28. Kiyama, H. and Emson, P. C. (1991) An in situ hybridization histochemistry method for the use of alkaline phosphatase-labeled oligonucleotide probes in the small intestine. J. Histochem. Cytoch. 39, 1377–1384.

    Article  CAS  Google Scholar 

  29. Kiyama, H., McGowan, E. M., and Emson, P. C. (1991) Co-expression of cholecystokinin mRNA and tyrosine hydroxylase mRNA in population of rat substantia nigra cells: a study using a combined radioactive and nonradioacutive in situ hybridization histochemistry. Mol.Brain Res. 9, 87–93.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1992 The Humana Press, Totowa, NJ

About this protocol

Cite this protocol

Kiyama, H., Emson, P.C., Tohyama, M. (1992). In Situ Hybridization Histochemistry Using Alkaline Phosphatase-Labeled Oligodeoxynucleotide Probe. In: Longstaff, A., Revest, P. (eds) Protocols in Molecular Neurobiology. Methods in Molecular Biology™, vol 13. Springer, Totowa, NJ. https://doi.org/10.1385/0-89603-199-3:167

Download citation

  • DOI: https://doi.org/10.1385/0-89603-199-3:167

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-199-9

  • Online ISBN: 978-1-59259-500-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics