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The Estimation of mRNA Content by Poly(U) Hybridization

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Nucleic Acids

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2))

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Abstract

The sequence of poly(adenylic) acid, present at the 3′ end of the majority of eukaryotic mRNA molecules, forms the basis of a sensitive technique for the estimation of mRNA content in nucleic acid samples. Under suitable conditions, poly(A) will form RNA-RNA hybrids with poly(U) in vitro. The poly (A) content of RNA samples can therefore be detected by hybridization with saturating amounts of 3H-poly(U) (1,2). Following the removal of excess 3H-poly(U) by ribonuclease treatment, the hybrids can be collected by TCA precipitation and quantified by scintillation counting. If the results are compared with data obtained from a parallel experiment using known amounts of poly (A), a value for the poly (A) content of any number of RNA preparations can be obtained. The technique can be used to detect less than 10−10g of poly(A).

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References

  1. Covey, S. N., and Grierson, D. (1976) The measurement of plant polyadenylic acid by hybridization with radioactive polyuridylic acid. Planta 131, 75–79.

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  2. Bishop, J. O., Rosbash, M., and Evans, D. (1974) Polynucleotide sequences in eukaryotic DNA and RNA that form ribonuclease-resistant complexes with polyuridylic acid. J. Mol. Biol. 85, 75–86.

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John M. Walker

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© 1984 The Humana Press Inc.

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Slater, R.J. (1984). The Estimation of mRNA Content by Poly(U) Hybridization. In: Walker, J.M. (eds) Nucleic Acids. Methods in Molecular Biology, vol 2. Humana Press. https://doi.org/10.1385/0-89603-064-4:125

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  • DOI: https://doi.org/10.1385/0-89603-064-4:125

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-064-0

  • Online ISBN: 978-1-59259-489-4

  • eBook Packages: Springer Protocols

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