Skip to main content

A Cell-Free Expression Screen to Identify Fusion Tags for Improved Protein Expression

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1118))

Abstract

Cell-free protein synthesis can now be routinely used for the rapid screening of protein expression at the microliter level using PCR-amplified templates. However, identification of the optimal expression construct for a target protein can still be a problem. A rapid cell-free procedure is described here for the systematic assessment of a range of diverse fusion tags on the expression and solubility of any given target protein. Overlap/extension PCR is used to fuse a library of T7 promoter (T7p)-tag fragments with a gene-T7terminator (T7ter) fragment to produce cell-free expression templates encoding different fusion proteins. These constructs are then expressed in a series of small-scale (50 μL) Escherichia coli cell-free reactions and SDS-PAGE analysis is used to identify the optimal fusion tag(s). This screen is particularly useful for the identification of expression constructs for proteins that are normally poorly expressed or are insoluble.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Kralicek AV, Ozawa K (2011) Advances in cell-free protein synthesis for NMR sample preparation. In: Dingley AJ, Pascal S (eds) Biomolecular NMR spectroscopy, vol 3, Advances in biomedical spectroscopy. Ios Press, Amsterdam, pp 3–19

    Google Scholar 

  2. Matsuda T, Kigawa T, Koshiba S et al (2006) Cell-free synthesis of zinc-binding proteins. J Struct Funct Genomics 7(2):93–100

    Article  CAS  PubMed  Google Scholar 

  3. Endo S, Tomimoto Y, Shimizu H et al (2006) Effects of E. coli chaperones on the solubility of human receptors in an in vitro expression system. Mol Biotechnol 33(3):199–209

    Article  CAS  PubMed  Google Scholar 

  4. Ozawa K, Jergic S, Crowther JA et al (2005) Cell-free protein synthesis in an autoinduction system for NMR studies of protein–protein interactions. J Biomol NMR 32(3):235–241

    Article  CAS  PubMed  Google Scholar 

  5. Schwarz D, Dotsch V, Bernhard F (2008) Production of membrane proteins using cell-free expression systems. Proteomics 8(19):3933–3946

    Article  CAS  PubMed  Google Scholar 

  6. Xu Z, Chen H, Yin X et al (2005) High-level expression of soluble human beta-defensin-2 fused with green fluorescent protein in Escherichia coli cell-free system. Appl Biochem Biotechnol 127(1):53–62

    Article  CAS  PubMed  Google Scholar 

  7. Xun Y, Tremouilhac P, Carraher C et al (2009) Cell-free synthesis and combinatorial selective 15N-labeling of the cytotoxic protein amoebapore A from Entamoeba histolytica. Protein Expr Purif 68(1):22–27

    Article  CAS  PubMed  Google Scholar 

  8. Wu PS, Ozawa K, Lim SP et al (2007) Cell-free transcription/translation from PCR-amplified DNA for high-throughput NMR studies. Angew Chem Int Ed Engl 46(18):3356–3358

    Article  CAS  PubMed  Google Scholar 

  9. Yabuki T, Motoda Y, Hanada K et al (2007) A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis. J Struct Funct Genomics 8(4):173–191

    Article  CAS  PubMed  Google Scholar 

  10. Chumpolkulwong N, Sakamoto K, Hayashi A et al (2006) Translation of ‘rare’ codons in a cell-free protein synthesis system from Escherichia coli. J Struct Funct Genomics 7(1):31–36

    Article  CAS  PubMed  Google Scholar 

  11. Esposito D, Chatterjee DK (2006) Enhancement of soluble protein expression through the use of fusion tags. Curr Opin Biotechnol 17(4):353–358

    Article  CAS  PubMed  Google Scholar 

  12. Kralicek AV, Radjainia M, Mohamad Ali NA et al (2011) A PCR-directed cell-free approach to optimize protein expression using diverse fusion tags. Protein Expr Purif 80(1):117–124

    Article  CAS  PubMed  Google Scholar 

  13. Apponyi MA, Ozawa K, Dixon NE et al (2008) Cell-free protein synthesis for analysis by NMR spectroscopy. Methods Mol Biol 426:257–268

    Article  CAS  PubMed  Google Scholar 

  14. Cha-aim K, Fukunaga T, Hoshida H et al (2009) Reliable fusion PCR mediated by GC-rich overlap sequences. Gene 434(1–2):43–49

    Article  CAS  PubMed  Google Scholar 

  15. Seki E, Matsuda N, Yokoyama S et al (2008) Cell-free protein synthesis system from Escherichia coli cells cultured at decreased temperatures improves productivity by decreasing DNA template degradation. Anal Biochem 377(2):156–161

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

This work has been supported by New Zealand Government grants from Plant & Food Research (Blue Skies fund) to A.V.K., the New Zealand Foundation for Research Science and Technology (CO6X0701) to A.V.K. Thanks goes to Colm Carraher (Plant & Food Research, Auckland, New Zealand) for critical reading of this manuscript.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Kralicek, A. (2014). A Cell-Free Expression Screen to Identify Fusion Tags for Improved Protein Expression. In: Alexandrov, K., Johnston, W. (eds) Cell-Free Protein Synthesis. Methods in Molecular Biology, vol 1118. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-782-2_3

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-782-2_3

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-781-5

  • Online ISBN: 978-1-62703-782-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics