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Bioluminescence Reporter Gene-Based Detection of MicroRNAs

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1098))

Abstract

MicroRNAs (miRNAs) are an abundant class of small noncoding RNA molecules that inhibit the expression of cognate genes in multicellular organisms. These small RNAs have been demonstrated to play crucial roles in a variety of biological processes including cell differentiation, proliferation, and survival. Knowledge of specific expression patterns of miRNAs is critical for functional studies. Here, we describe a bioluminescence reporter gene-based method to measure miRNA activity in cultured cells and mice using a Gaussia luciferase reporter gene controlled by miRNA binding sites in its 3′untranslated region. This method can be used to noninvasively monitor the expression patterns of functionally active miRNAs involved in different biological processes or diseases in mice.

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References

  1. Wienholds E, Plasterk RH (2005) MicroRNA function in animal development. FEBS Lett 579:5911–5922

    Article  CAS  PubMed  Google Scholar 

  2. Bartel DP (2009) MicroRNAs: target recognition and regulatory functions. Cell 136:215–233

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  3. Bernardo BC, Charchar FJ, Lin RC, McMullen JR (2012) A microRNA guide for clinicians and basic scientists: background and experimental techniques. Heart Lung Circ 21:131–142

    Article  CAS  PubMed  Google Scholar 

  4. Brennecke J, Hipfinder DR, Strark A et al (2003) Bantan encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 113:25–36

    Article  CAS  PubMed  Google Scholar 

  5. Tannous BA, Kim DE, Fernandez JL et al (2005) Codon-optimized Gaussia luciferase cDNA for mammalian gene expression in culture and in vivo. Mol Ther 11:435–443

    Article  CAS  PubMed  Google Scholar 

  6. Hutvágner G, Zamore PD (2002) A microRNA in a multiple-turnover RNAi enzyme complex. Science 297:2056–2060

    Article  PubMed  Google Scholar 

  7. Zeng Y, Wagner EJ, Cullen BR (2002) Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells. Mol Cell 9:1327–1333

    Article  CAS  PubMed  Google Scholar 

  8. Lee JY, Kim S, Hwang do W et al (2008) Development of a dual-luciferase reporter system for in vivo visualization of MicroRNA biogenesis and posttranscriptional regulation. J Nucl Med 49:285–294

    Article  CAS  PubMed  Google Scholar 

  9. Ko MH, Kim S, Hwang do W et al (2008) Bioimaging of the unbalanced expression of microRNA9 and microRNA9* during the neuronal differentiation of P19 cells. FEBS J 275:2605–2616

    Article  CAS  PubMed  Google Scholar 

  10. Kim HJ, Chung JK, Hwang DW et al (2009) In vivo imaging of miR-221 biogenesis in papillary thyroid carcinoma. Mol Imaging Biol 11:71–78

    Article  PubMed  Google Scholar 

  11. Ko HY, Hwang do W, Lee DS et al (2009) A reporter gene imaging system for monitoring microRNA biogenesis. Nat Protoc 4:1663–1669

    Article  CAS  PubMed  Google Scholar 

  12. Kang WJ, Cho YL, Chae JR et al (2012) Dual optical biosensors for imaging microRNA-1 during myogenesis. Biomaterials 33:6430–6437

    Article  CAS  PubMed  Google Scholar 

  13. Huang B, Li W, Zhao B et al (2009) MicroRNA expression profiling during neural differentiation of mouse embryonic carcinoma P19 cells. Acta Biochim Biophys Sin 41:231–236

    Article  CAS  PubMed  Google Scholar 

  14. Joseph S, David WR (2001) Molecular cloning: a laboratory manual. Cold Spring Habor, New York

    Google Scholar 

  15. Pacherník J, Bryja V, Esner M et al (2005) Neural differentiation of pluripotent mouse embryonal carcinoma cells by retinoic acid: inhibitory effect of serum. Physiol Res 54:115–122

    PubMed  Google Scholar 

Download references

Acknowledgement

This work was supported by the Bio & Medical Technology Development Program of the National Research Foundation (NRF) funded by the Korean government (MEST) (No. 2012-0006097) and a grant of the Korea Healthcare technology R&D Project, Ministry of Health and Welfare (A120254) to SK. This work was also supported by a grant from the National Research Foundation of Korea funded by MEST (No. 2011-0016863) to Y.S.L.

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Ko, H.Y., Lee, Y.S., Kim, S. (2014). Bioluminescence Reporter Gene-Based Detection of MicroRNAs. In: Badr, C. (eds) Bioluminescent Imaging. Methods in Molecular Biology, vol 1098. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-718-1_7

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  • DOI: https://doi.org/10.1007/978-1-62703-718-1_7

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-717-4

  • Online ISBN: 978-1-62703-718-1

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