Abstract
To date a number of cereal genomes are fully sequenced and more are near completion. The information within these genomes will be of most use to scientists when every gene has been functionally characterized leading to the complete annotation of these genomes. This chapter describes how functional characterization of plant proteins can be achieved via in vitro or in vivo methods. The first section of this chapter describes the use of Escherichia coli as a host for expression of plant genes, followed by purification and in vitro characterization of the resultant enzyme. The second section of this chapter details the methods involved in transient gene expression in Zea mays leaf protoplasts for in vivo functional characterization of protein localization.
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Bradbury LMT, Niehaus TD, Hanson AD (2012) Comparative genomics approaches to understanding and manipulating plant metabolism. Curr Opin Biotechnol. doi:10.1016/j.copbio.2012.07.005
Katzen F, Chang G, Kudlicki W (2005) The past, present and future of cell-free protein synthesis. Trends Biotechnol 23:150–156
Bradbury LMT, Gillies SA, Brushett DJ et al (2008) Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice. Plant Mol Biol 68:439–449
Bradbury LMT, Shumskaya M, Tzfadia O et al (2012) Lycopene cyclase paralog CruP protects against reactive oxygen species in oxygenic photosynthetic organisms. PNAS 109:E1888–E1897
Herrero S, González E, Gillikin JW et al (2011) Identification and characterization of a pyridoxal reductase involved in the vitamin B6 salvage pathway in Arabidopsis. Plant Mol Biol 76:157–169
Quinlan RF, Shumskaya M, Bradbury LMT et al (2012) Synergistic interactions between carotene ring hydroxylases drive lutein formation in plant carotenoid biosynthesis. Plant Physiol 160:204–214. doi:10.1104/pp. 112.198556
Avisar D, Prokhnevsky AI, Makarova KS et al (2008) Is required for rapid trafficking of Golgi stacks, peroxisomes, and mitochondria in leaf cells of nicotiana benthamiana. Plant Physiol 146:1098–1108
Zhang Y, Su J, Duan S, Ao Y et al (2011) A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes. Plant Methods 7:30
Sheen J (1991) Molecular mechanisms underlying the differential expression of maize pyruvate, orthophosphate dikinase genes. Plant Cell 3:225–245
van Bokhoven H, Verver J, Wellink J et al (1993) Protoplasts transiently expressing the 200K coding sequence of cowpea mosaic virus B-RNA support replication of M-RNA. J Gen Virol 74:2233–2241
Shumskaya M, Bradbury LMT, Monaco RR et al (2012) Plastid localization of a key carotenoid enzyme is altered by isozyme, allelic variation and activity. Plant Cell 24(9):3725–41
Suzuki M, Zhang J, Liu M et al (2005) Single protein production in living cells facilitated by an mRNA interferase. Mol Cell 18:253–261
Jeanguenin L, Lara-Nunez A, Pribat A et al (2010) Moonlighting glutamate formiminotransferases can functionally replace 5-formyltetrahydrofolate cycloligase. J Biol Chem 285:41557–41566
Park H, Kreunen SS, Cuttriss AJ, Dellapenna D et al (2002) Identification of the carotenoid isomerase provides insight into carotenoid biosynthesis, prolamellar body formation, and photomorphogenesis. Plant Cell 14:321–332
Wang Y, Wu WH (2010) Plant sensing and signaling in response to K+-deficiency. Mol Plant 3:280–287
Ranocha P, Bourgis F, Ziemak MJ et al (2000) Characterization and functional expression of cDNAs encoding methionine-sensitive and-insensitive homocysteine S-methyltransferases from Arabidopsis. J Biol Chem 275:5962–15968
Acknowledgements
I would like to thank Dr. Maria Shumskaya for her guidance in the procedures of protoplast isolation and transformation. Many thanks to Dr. Abby Cuttriss and Dr. Rémi Zallot for their comments and thanks to Prof. Eleanore Wurtzel and Dr. Maria Shumskaya for use of their protoplast images.
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Bradbury, L.M.T. (2014). Functional Analysis by Protein Biochemistry. In: Henry, R., Furtado, A. (eds) Cereal Genomics. Methods in Molecular Biology, vol 1099. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-715-0_13
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DOI: https://doi.org/10.1007/978-1-62703-715-0_13
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Publisher Name: Humana Press, Totowa, NJ
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