Skip to main content

A Historical Overview of Bromo-Substituted DNA and Sister Chromatid Differentiation

  • Protocol
  • First Online:
Functional Analysis of DNA and Chromatin

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1094))

Abstract

The thymidine analogue 5-bromo-2′-deoxyuridine (BrdU) has been widely used to make sister chromatid differentiation (SCD) evident in metaphase chromosomes of cells grown for two cycles in BrdU and, thus, containing varying amounts of the thymidine analogue. A direct consequence was the possibility of making sister chromatid exchange (SCE) evident without using autoradiographic procedures. The latter phenomenon was first discovered in 1953, and its frequency is considered a reliable marker of pathological cell situations, as well as an indicator of mutagenic compounds. Several experimental procedures were found which produced SCD, such as the use of fluorochromes like 33258 Hoechst or acridine orange, whose observation under fluorescence microscopy was directly recorded by photos or stained with Giemsa to make chromosome preparations permanent. Other treatments followed by Giemsa staining required the use of saline hot solutions, acid solutions, nuclease attack and specific monoclonal antibodies. Basically two molecular mechanisms were invoked to explain the different affinity of Giemsa stain for differential BrdU-substituted chromatid DNA. The first implied debromination of chromatid DNA, whose occurrence would be greater in chromatids containing an amount of BrdU greater than that present in sister chromatids. The second mechanism, although not denying the importance of DNA debromination, postulated that chromatin structural organization, in terms of DNA–protein and/or protein–protein DNA interaction, is responsible for SCD production.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Tucker JD (1986) Determination of the baseline sister chromatid exchange frequency in human and mouse peripheral lymphocytes using monoclonal antibodies and very low doses of bromodeoxyuridine. Cytogenet Cell Genet 43:38–42

    Article  PubMed  CAS  Google Scholar 

  2. Wilson DM III, Thompson LH (2007) Molecular mechanisms of sister chromatid exchange. Mutation Res 616:11–23

    Article  PubMed  CAS  Google Scholar 

  3. Rudd MK, Friedman C, Parghi SS et al (2007) Elevates rates of sister chromatid exchange at chromatid ends. Plos Genet 3(2):e32

    Article  PubMed  Google Scholar 

  4. Gonzalez-Beltran F, Morales-Ramirez P (2003) Repairability during G1 of lesions eliciting sister chromatid exchanges induced by methylmethanesulfonate or ethylmethanesulfonate in bromodeoxyuridine substituted and unsubstituted DNA strands. Mutagenesis 18:13–17

    Article  PubMed  CAS  Google Scholar 

  5. Attia SM (2012) Molecular cytogenetics evaluation of the aneugenic effects of teniposide in somatic and germinal cells of male mice. Mutagenesis 27:31–39

    Article  PubMed  CAS  Google Scholar 

  6. Latt SA (1974) Localization of sister chromatid exchanges in human chromosomes. Science 185:74–76

    Article  PubMed  CAS  Google Scholar 

  7. Ikushima T, Wolff S (1974) Sister chromatid exchanges induced by light flashes to 5-bromodeoxyuridine and 5-iododeoxyuridine substituted Chinese hamster chromosomes. Expl Cell Res 87:15–19

    Article  CAS  Google Scholar 

  8. Karaman A, Nasir BD, Esref KM et al (2008) Alteration of sister chromatid exchange frequency in gastric cancer and chronic atrophic gastritis patients with and without H. pylori infection. World J Gastroenterol 14(16):2534–2539

    Article  PubMed  Google Scholar 

  9. Gatti M, Pimpinelli S, Baker BS (1980) Relationships among chromatid interchanges, sister chromatid exchanges and meiotic recombination in Drosophila melanogaster. Proc Natl Acad Sci U S A 77:1575–1579

    Article  PubMed  CAS  Google Scholar 

  10. Taylor JH (1958) Sister chromatid exchange in tritium labelled chromosomes. Genetics 43:515–529

    PubMed  CAS  Google Scholar 

  11. Zakharov AF, Egolina NA (1972) Differential spiralization along mammalian mitotic chromosomes. I. BrdU-revealed differentiation in Chinese hamster chromosomes. Chromosoma 38:341–365

    Article  PubMed  CAS  Google Scholar 

  12. Latt SA (1973) Microfluorometric detection of deoxyribonucleic acid replication in human metaphase chromosomes. Proc Natl Acad Sci U S A 70:3395–3399

    Article  PubMed  CAS  Google Scholar 

  13. Kato H (1974) Spontaneous sister chromatid exchanges detected by a BrdU-labelling method. Nature 251:70–72

    Article  PubMed  CAS  Google Scholar 

  14. Perry P, Wolff S (1974) New Giemsa method for the differential staining of sister chromatids. Nature 251:156–158

    Article  PubMed  CAS  Google Scholar 

  15. Wolff S, Perry P (1974) Differential Giemsa staining of sister chromatids and the study of sister chromatid exchanges without autoradiography. Chromosoma 48:341–353

    Article  PubMed  CAS  Google Scholar 

  16. Goto K, Maeda S, Kano Y, Sugiyama T (1978) Factors involved in differential Giemsa staining of sister chromatids. Chromosoma 66:351–359

    Article  PubMed  CAS  Google Scholar 

  17. Hazen MJ, Villanueva A, Juarranz A et al (1985) Photosensitizing dyes and fluorochromes as substitutes for 33258 Hoechst in the fluorescence-plus-Giemsa (FPG) chromosome technique. Histochemistry 83:241–244

    Article  PubMed  CAS  Google Scholar 

  18. Buys CHC, Osinga J, Stienstra S (1980) Rapid irradiation procedure for obtaining permanent differential staining of sister chromatids and aspects of its underlying mechanism. Hum Genet 57:35–38

    Google Scholar 

  19. Korenberg JR, Freedlander EF (1974) Giemsa technique for the detection of sister chromatid exchanges. Chromosoma 48:355–360

    Article  PubMed  CAS  Google Scholar 

  20. Burkholder GD, Wang HC (1978) Electron microscopy of differentially BrdU-substituted sister chromatids treated with sodium phosphate. Chromosoma 70:101–107

    Article  PubMed  CAS  Google Scholar 

  21. Gordon JS, Bell GI, Martinson HC, Rutter WJ (1976) Selective interaction of 5′-bromodeoxyuridine substituted DNA with different chromosomal proteins. Biochemistry 15:4778–4786

    Article  PubMed  CAS  Google Scholar 

  22. Takayama S, Sakanishi S (1977) Differential Giemsa staining of sister chromatids after extraction with acids. Chromosoma 64:109–115

    Article  PubMed  CAS  Google Scholar 

  23. Simpson RT, Seale RL (1974) Characterization of chromatin extensively substituted with 5-bromodeoxyuridine. Biochemistry 13:4609–4616

    Article  PubMed  CAS  Google Scholar 

  24. Jan KY, Tzeng YJ, Lee TC (1985) Opposite staining effect of two silver staining techniques on sister chromatids. Expl Cell Res 159:55–62

    Article  CAS  Google Scholar 

  25. Jan KY, Su PF, Lee TC (1985) Reversal differential staining of sister chromatids induced by Hoechst plus black light and endonucleases. Expl Cell Res 157:307–314

    Article  CAS  Google Scholar 

  26. Buys CHC, Stienstra S (1980) Involvement of sulphydryl groups of chromosomal proteins in sister chromatid differentiation. Chromosoma 77:325–332

    Article  PubMed  CAS  Google Scholar 

  27. Takayama S, Utsumi R, Sasaki Y (1981) Topographic examination of sister chromatid differential staining by Nomarski interference microscopy and electron microscopy. Chromosoma 82:113–119

    Article  PubMed  CAS  Google Scholar 

  28. Mezzanotte R, Peretti D, Orrù S et al (1989) DNA alteration induced by ultraviolet light in human metaphase chromosomes substituted with 5′-bromodeoxyuridine: monitoring by monoclonal antibodies to double stranded and single stranded DNA. Chromosoma 97:356–362

    Article  PubMed  CAS  Google Scholar 

  29. Mezzanotte R, Rossino R, Orrù S et al (1989) Nuclease activity in human metaphase chromosomes substituted with 5′-bromodeoxyuridine. Chromosoma 97:334–338

    Article  PubMed  CAS  Google Scholar 

  30. Burkholder GD (1982) The mechanism responsible for reciprocal BrdU-Giemsa staining. Expl Cell Res 141:127–137

    Article  CAS  Google Scholar 

  31. Ribas M, Korenberg JR, Peretti D et al (1994) Sister chromatid differentiation in 5-bromo-2′-deoxyuridine-substituted chromosomes: a study with DNA-specific ligands and monoclonal antibody to histone H2B. Chromosome Res 2:428–438

    Article  PubMed  CAS  Google Scholar 

  32. Speit G (1984) Considerations on the mechanism of differential Giemsa staining of BrdU-substituted chromosomes. Hum Genet 67:264–269

    Article  PubMed  CAS  Google Scholar 

  33. Jack EM, Harrison CJ, White GRM et al (1989) Fine structural aspects of bromodeoxyuridine incorporation in sister chromatid differentiation and replication banding. J Cell Sci 94:287–297

    PubMed  Google Scholar 

  34. Salvadori S, Coluccia E, Cannas R et al (2003) Replication banding in two Mediterranean moray eels. Chromosomal characterization and comparison. Genetica 119:253–258

    Article  PubMed  CAS  Google Scholar 

  35. Haaf T, Schmid M (1986) Differential inhibition of sister chromatid condensation induced by 5-azadeoxycytidine in human chromosomes. Chromosoma 94:389–394

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

The authors wish to thank Ms. Mary Ann Groeneweg for checking and correcting the English manuscript.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer Science+Business Media, New York

About this protocol

Cite this protocol

Mezzanotte, R., Nieddu, M. (2014). A Historical Overview of Bromo-Substituted DNA and Sister Chromatid Differentiation. In: Stockert, J., Espada, J., Blázquez-Castro, A. (eds) Functional Analysis of DNA and Chromatin. Methods in Molecular Biology, vol 1094. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-706-8_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-706-8_8

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-705-1

  • Online ISBN: 978-1-62703-706-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics