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Cell-Free Expression of Protein Complexes for Structural Biology

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Structural Genomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1091))

Abstract

Cell-free protein synthesis is advantageous for the expression of protein complexes, since it is suitable for the co-expression of two or more components of the target protein complexes. The quantity and the quality of cell-free expressed complexes are generally better than those of protein complexes expressed in conventional cell-based systems, because various parameters, such as the stoichiometry of the component proteins, can be more precisely controlled. In this chapter, we describe techniques for the expression of protein complexes by an Escherichia coli cell-free protein synthesis system, which has been successfully utilized in crystallographic structural studies.

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References

  1. Kigawa T, Yabuki T, Matsuda N et al (2004) Preparation of Escherichia coli cell extract for highly productive cell-free protein expression. J Struct Funct Genomics 5:63–68

    Article  CAS  PubMed  Google Scholar 

  2. Madin K, Sawasaki T, Ogasawara T et al (2000) A highly efficient and robust cell-free protein synthesis system prepared from wheat embryos: plants apparently contain a suicide system directed at ribosomes. Proc Natl Acad Sci USA 97:559–564

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Wakiyama M, Kaitsu Y, Matsumoto T et al (2010) Coupled transcription and translation from polymerase chain reaction-amplified DNA in Drosophila Schneider 2 cell-free system. Anal Biochem 400:142–144

    Article  CAS  PubMed  Google Scholar 

  4. Mikami S, Kobayashi T, Masutani M et al (2008) A human cell-derived in vitro coupled transcription/translation system optimized for production of recombinant proteins. Protein Expr Purif 62:190–198

    Article  CAS  PubMed  Google Scholar 

  5. Chumpolkulwong N, Sakamoto K, Hayashi A et al (2006) Translation of ‘rare’ codons in a cell-free protein synthesis system from Escherichia coli. J Struct Funct Genomics 7:31–36

    Article  CAS  PubMed  Google Scholar 

  6. Yabuki T, Motoda Y, Hanada K et al (2007) A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis. J Struct Funct Genomics 8:173–191

    Article  CAS  PubMed  Google Scholar 

  7. Aoki M, Matsuda T, Tomo Y et al (2009) Automated system for high-throughput protein production using the dialysis cell-free method. Protein Expr Purif 68:128–136

    Article  CAS  PubMed  Google Scholar 

  8. Kigawa T, Yamaguchi-Nunokawa E, Kodama K et al (2002) Selenomethionine incorporation into a protein by cell-free synthesis. J Struct Funct Genomics 2:29–35

    Article  CAS  PubMed  Google Scholar 

  9. Kigawa T, Yabuki T, Yoshida Y et al (1999) Cell-free production and stable-isotope labeling of milligram quantities of proteins. FEBS Lett 442:15–19

    Article  CAS  PubMed  Google Scholar 

  10. Yokoyama S, Terwilliger TC, Kuramitsu S et al (2007) RIKEN aids international structural genomics efforts. Nature 445:21

    Article  CAS  PubMed  Google Scholar 

  11. Shimono K, Goto M, Kikukawa T et al (2009) Production of functional bacteriorhodopsin by an Escherichia coli cell-free protein synthesis system supplemented with steroid detergent and lipid. Protein Sci 18:2160–2171

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Wada T, Shimono K, Kikukawa T et al (2011) Crystal structure of the eukaryotic light-driven proton-pumping rhodopsin, Acetabularia rhodopsin II, from marine alga. J Mol Biol 411:986–998

    Article  CAS  PubMed  Google Scholar 

  13. Kimura-Soyema T, Shirouzu M, Yokoyama S (2013) Cell-free membrane protein expression. In: Methods in molecular biology: cell-free protein expression and engineering. Submitted

    Google Scholar 

  14. Kukimoto-Niino M, Sakamoto A, Kanno E et al (2008) Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases. Structure 16:1478–1490

    Article  CAS  PubMed  Google Scholar 

  15. Morishita EC, Murayama K, Kato-Murayama M et al (2011) Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of Sam68. Structure 19:1496–1508

    Article  CAS  PubMed  Google Scholar 

  16. Hanawa-Suetsugu K, Kukimoto-Niino M, Mishima-Tsumagari C et al (2012) Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms. Proc Natl Acad Sci USA 109:3305–3310

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Kusano S, Kukimoto-Niino M, Hino N et al (2012) Structural basis for extracellular interactions between calcitonin receptor-like receptor and receptor activity-modifying protein 2 for adrenomedullin-specific binding. Protein Sci 21:199–210

    Article  CAS  PubMed  Google Scholar 

  18. Kusano S, Kukimoto-Niino M, Hino N et al (2012) Structural basis of interleukin-5 dimer recognition by its α receptor. Protein Sci 21:850–864

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Arai S, Saijo S, Suzuki K et al (2013) Rotation mechanism of Enterococcus hirae V1-ATPase based on asymmetric crystal structures. Nature 493:703–707

    Article  CAS  PubMed  Google Scholar 

  20. Saijo S, Arai S, Hossain KM et al (2011) Crystal structure of the central axis DF complex of the prokaryotic V-ATPase. Proc Natl Acad Sci USA 108:19955–19960

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Arai S, Yamato I, Shiokawa A et al (2009) Reconstitution in vitro of the catalytic portion (NtpA3-B3-D-G complex) of Enterococcus hirae V-type Na+-ATPase. Biochem Biophys Res Commun 390:698–702

    Article  CAS  PubMed  Google Scholar 

  22. Rahman S, Ishizuka-Katsura Y, Arai S et al (2011) Expression, purification and characterization of isoforms of peripheral stalk subunits of human V-ATPase. Protein Expr Purif 78:181–188

    Article  CAS  PubMed  Google Scholar 

  23. Davanloo P, Rosenberg AH, Dunn JJ et al (1984) Cloning and expression of the gene for bacteriophage T7 RNA polymerase. Proc Natl Acad Sci USA 81:2035–2039

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

We thank T. Mishima and T. Nakayama for their assistance in manuscript preparation. This work was supported by the RIKEN Structural Genomics/Proteomics Initiative (RSGI), the National Project on Protein Structural and Functional Analyses, and the Targeted Proteins Research Program (TPRP), of the Ministry of Education, Culture, Sports, Science and Technology of Japan.

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Terada, T., Murata, T., Shirouzu, M., Yokoyama, S. (2014). Cell-Free Expression of Protein Complexes for Structural Biology. In: Chen, Y. (eds) Structural Genomics. Methods in Molecular Biology, vol 1091. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-691-7_10

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  • DOI: https://doi.org/10.1007/978-1-62703-691-7_10

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-690-0

  • Online ISBN: 978-1-62703-691-7

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