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Essential Methods of Plant Sample Preparation for Light Microscopy

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Plant Cell Morphogenesis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1080))

Abstract

There are various preparatory techniques for light microscopy permitting access to the inner structure of plant body and its development. Minute objects might be processed as whole-mount preparations, while voluminous ones should be separated into smaller pieces. Hereby we summarize some of the “classical” techniques to cut more voluminous objects into slices and access their inner structure either for simple anatomical analysis or for further processing (e.g., histochemistry, immunohistochemistry, in situ hybridization, enzyme histochemistry).

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References

  1. Pearse AG (1980) Histochemistry (theoretical and applied): preparative and optical technology. Churchill Livingstone, Edinburg

    Google Scholar 

  2. Pearse AG (1985) Histochemistry (theoretical and applied): analytical technology. Churchill Livingstone, Edinburg

    Google Scholar 

  3. O'Brien TP, Mccully ME (1981) The study of plant structure: principles and selected methods. Termarcarphi Pty LTD, Melbourne

    Google Scholar 

  4. Ruzin SE (1999) Plant microtechnique and microscopy. Oxford University Press, Oxford

    Google Scholar 

  5. Fox CH, Johnson FB, Whiting J et al (1985) Formaldehyde fixation. J Histochem Cytochem 33:845–853

    Article  PubMed  CAS  Google Scholar 

  6. Medawar PB (1941) The rate of penetration of fixatives. J Royal Micro Soc 61:46–57

    Article  Google Scholar 

  7. Bancroft JD, Gamble M (2008) Theory and practice of histological techniques. Churchill Livingstone, London

    Google Scholar 

  8. Mersey B, Mccully ME (1978) Monitoring of the course of fixation of plant cells. J Micro 114:49–76

    Article  Google Scholar 

  9. Coetzee J, van der Merwe CF (1985) Penetration rate of glutaraldehyde in various buffers into plant tissue and gelatin gels. J Micro 137:129–136

    Article  CAS  Google Scholar 

  10. Gardner RO (1975) An overview of botanical clearing technique. Biotech Histochem 50:99–105

    Article  CAS  Google Scholar 

  11. Bybd DW Jr, Kirkpatrick T, Barker KR (1983) An improved technique for clearing and staining plant tissues for detection of nematodes. J Nematol 15:142–143

    PubMed  CAS  Google Scholar 

  12. Stebbins GL Jr (1938) A bleaching and clearing method for plant tissues. Science 87:21–22

    Article  PubMed  Google Scholar 

  13. Malamy JE, Benfey PN (1997) Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 124:33–44

    PubMed  CAS  Google Scholar 

  14. Shobe WR, Lersten NR (1967) A technique for clearing and staining gymnosperm leaves. Bot Gaz 128:150–152

    Article  Google Scholar 

  15. Sporne KR (1948) A note on a rapid clearing technique of wide application. New Phytol 47:290–291

    Article  Google Scholar 

  16. Simpson JLS (1929) A short method of clearing plant tissues for anatomical studies. Biotech Histochem 4:131–132

    Article  CAS  Google Scholar 

  17. Lux A, Morita S, Abe J et al (2005) An improved method for clearing and staining free-hand sections and whole-mount samples. Ann Bot 96:989–996

    Article  PubMed  Google Scholar 

  18. Peterson CA, Fletcher RA (1973) Lactic acid clearing and fluorescent staining for demonstration of sieve tubes. Biotech Histochem 48:23–27

    Article  CAS  Google Scholar 

  19. Lersten NR (1986) Modified clearing method to show sieve tubes in minor veins of leaves. Biotech Histochem 61:231–234

    Article  CAS  Google Scholar 

  20. Herr JM Jr (1971) A new clearing-squash technique for the study of ovule development in angiosperms. Am J Bot 58:785–790

    Article  Google Scholar 

  21. Beeckman T, Engler G (1994) An easy technique for the clearing of histochemically stained plant tissue. Plant Mol Biol Rep 12:37–42

    Article  Google Scholar 

  22. Bougourd S, Marrison J, Haseloff J (2000) An aniline blue staining procedure for confocal microscopy and 3D imaging of normal and perturbed cellular phenotypes in mature Arabidopsis embryos. Plant J 24:543–550

    Article  PubMed  CAS  Google Scholar 

  23. Cunningham JL (1972) A miracle mounting fluid for permanent whole-mounts of microfungi. Mycologia 64:906–911

    Article  Google Scholar 

  24. Truernit E, Bauby H, Dubreucq B et al (2008) High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of phloem development and structure in Arabidopsis. Plant Cell 20:1494–1503

    Article  PubMed  CAS  Google Scholar 

  25. Dubrovsky JG, Soukup A, Napsucialy-Mendivil S et al (2009) The lateral root initiation index: an integrative measure of primordium formation. Ann Bot 103:807–817

    Article  PubMed  CAS  Google Scholar 

  26. Zelko I, Lux A, Sterckeman T et al (2012) An easy method for cutting and fluorescent staining of thin roots. Ann Bot 110:475–478

    Article  PubMed  CAS  Google Scholar 

  27. de Almeida Engler J, Van Montagu M, Engler G (1994) Hybridization in situ of whole-mount messenger RNA in plants. Plant Mol Biol Rep 12:321–331

    Article  Google Scholar 

  28. Klebs E (1869) Die Einschmelzungs-Methode, ein Beitrag zur mikroskopischen Technik. Arch micro Anat Entw 5:164–166

    Article  Google Scholar 

  29. Johansen DA (1940) Plant microtechnique. McGraw-Hill Book Co. Inc., New York

    Google Scholar 

  30. Sass JE (1940) Elements of Botanical microtechnique. McGraw-Hill Book Co. Inc., New York, London

    Google Scholar 

  31. Vitha S, Baluska F, Jasik J et al (2000) Steedman's wax for F-actin visualization. Dev plant soil sci 89:619–636

    CAS  Google Scholar 

  32. Sartori N, Richter K, Dubochet J (1993) Vitrification depth can be increased more than 10-fold by high-pressure freezing. J Micro 172:55–61

    Article  CAS  Google Scholar 

  33. Quintana C (1994) Cryofixation, cryosubstitution, cryoembedding for ultrastructural, immunocytochemical and microanalytical studies. Micron 25:63–99

    Article  PubMed  CAS  Google Scholar 

  34. Beneš K (1973) On the media improving freeze-sectioning of plant material. Biol Plant 15:50–56

    Article  Google Scholar 

  35. Tirichine L, Andrey P, Biot E et al (2009) 3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods 5:11–18

    Article  PubMed  Google Scholar 

  36. Knapp E, Flores R, Scheiblin D et al (2012) A cryohistological protocol for preparation of large plant tissue sections for screening intracellular fluorescent protein expression. Biotechniques 52:31–37

    Article  PubMed  CAS  Google Scholar 

  37. Zhang Z, Niu L, Chen X et al (2012) Improvement of plant cryosection. Front Biol 7:374–377

    Article  Google Scholar 

  38. Knox RB (1970) Freeze-sectioning of plant tissues. Biotech Histochem 45:265–272

    Article  CAS  Google Scholar 

  39. Cocco C, Melis GV, Ferri GL (2003) Embedding media for cryomicrotomy: an applicative reappraisal. Appl Immunohistochem Mol Morphol 11:274–280

    Article  PubMed  Google Scholar 

  40. Williams DBG, Lawton M (2010) Drying of organic solvents: quantitative evaluation of the efficiency of several desiccants. J Org Chem 75:8351–8354

    Article  PubMed  CAS  Google Scholar 

  41. Pappas PW (1971) The use of a chrome alum-gelatin (Subbing) solution as a general adhesive for paraffin sections. Biotech Histochem 46:121–124

    Article  CAS  Google Scholar 

  42. Brundrett MC, Enstone DE, Peterson CA (1988) A berberine–aniline blue fluorescent staining procedure for suberin, lignin, and callose in plant tissue. Protoplasma 146:133–142

    Article  Google Scholar 

  43. Ferri GL, Cocco C, Melis GV et al (2002) Equipment testing and tuning: the cold-knife cryomicrotome microm HM-560. Appl Immunohistochem Mol Morphol 10:381–386

    Article  PubMed  CAS  Google Scholar 

  44. Barthel LK, Raymond PA (1990) Improved method for obtaining 3-microns cryosections for immunocytochemistry. J Histochem Cytochem 38:1383–1388

    Article  PubMed  CAS  Google Scholar 

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Acknowledgment

This work has been supported by the COST-LD11017 project.

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Soukup, A., Tylová, E. (2014). Essential Methods of Plant Sample Preparation for Light Microscopy. In: Žárský, V., Cvrčková, F. (eds) Plant Cell Morphogenesis. Methods in Molecular Biology, vol 1080. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-643-6_1

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  • DOI: https://doi.org/10.1007/978-1-62703-643-6_1

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-642-9

  • Online ISBN: 978-1-62703-643-6

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