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Quantitative Proteomic Analysis of Intact Plastids

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Plant Proteomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1072))

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Abstract

Plastids are specialized cell organelles in plant cells that are differentiated into various forms including chloroplasts, chromoplasts, and amyloplasts, and fulfill important functions in maintaining the overall cell metabolism and sensing environmental factors such as sunlight. It is therefore important to grasp the mechanisms of differentiation and functional changes of plastids in order to enhance the understanding of vegetality. In this chapter, details of a method for the extraction of intact plastids that makes analysis possible while maintaining the plastid functions are provided; in addition, a quantitative shotgun method for analyzing the composition and changes in the content of proteins in plastids as a result of environmental impacts is described.

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References

  1. Lopez-Juez E, Pyke KA (2005) Plastids unleashed: their development and their integration in plant development. Int J Dev Biol 49:557–577

    Google Scholar 

  2. Mizusawa N, Yamamoto N, Miyao M (1999) Characterization of damage to the D1 protein of photosystem II under photoinhibitory illumination in non-phosphorylated and phosphorylated thylakoid membranes. J Photochem Photobiol B Biol 48:97–103

    Google Scholar 

  3. Perry SE, Li HM, Keegstra K (1991) In vitro reconstitution of protein transport into chloroplasts. Methods Cell Biol 34:327–344

    Google Scholar 

  4. Waegemann K, Soll J (1991) Characterization of the protein import apparatus in isolated outer envelope of chloroplast. Plant J 261:89–92

    Google Scholar 

  5. Nanjo Y, Oka H, Ikarashi N et al (2006) Rice plastidial N-glycosylated nucleotide pyrophosphatase/phosphodiesterase is transported from the ER-golgi to the chloroplast through the secretory pathway. Plant Cell 18:2582–2592

    Google Scholar 

  6. Blomqvist LA, Ryberg M, Sundqvist C (2008) Proteomic analysis of highly purified prolamellar bodies reveals their significance in chloroplast development. Photosynth Res 96:37–50

    Google Scholar 

  7. Miyao M (2009) Isolation of intact chloroplasts, thylakoids and photosystem II membranes from higher plants. Low Temp Sci 67:197–203

    Google Scholar 

  8. Kley J, Heil M, Muck A, Svatos A, Boland W (2010) Isolating intact chloroplasts from small Arabidopsis samples for proteomic studies. Anal Biochem 398:198–202

    Google Scholar 

  9. Shao J, Zhang Y, Yu J, Guo L, Ding Y (2011) Isolation of thylakoid membrane complexes from rice by a new double-strips BN/SDS-PAGE and bioinformatics prediction of stromal ridge subunits interaction. PLoS One 6:e20342. doi:10.1371/journal.phone 0020342

  10. Schulz A, Knoetzel J, Scheller HV, Mant A (2004) Uptake of a fluorescent dye as a swift and simple indicator of organelle intactness: import-competent chloroplasts from soil-grown Arabidopsis. J Histochem Cytochem 52:701–704

    Google Scholar 

  11. Fukao Y, Ferjani A, Tomioka R et al (2011) iTRAQ analysis reveals mechanisms of growth defects due to excess zinc in Arabidopsis. Plant Physiol 155:1893–1907

    Google Scholar 

  12. Sakai T, Hayashi K (1973) Studies on the distribution of starchy and sugary leaves in monocotyledonous plants. J Plant Res 86:13–25

    Google Scholar 

  13. Lilly JW, Havey MJ, Jackson SA, Jiang J (2001) Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants. Plant Cell 13:245–254

    Google Scholar 

  14. Zigler JS Jr, Lepe-Zuniga JL, Vistica B, Gery I (1985) Analysis of the cytotoxic effects of light-exposed HEPES-containing culture medium. In Vitro Cell Dev Biol 21:282–287

    Google Scholar 

  15. Kunst L (1998) Preparation of physiologically active chloroplasts from Arabidopsis. In: Martinez-Zapater JM, Salinas J (eds) Methods in molecular biology: Arabidopsis protocols, vol 82. Humana, Totowa, NJ, pp 43–48

    Google Scholar 

  16. Oldenburg DJ, Bendich AJ (2004) Changes in the structure of DNA molecules and the amount of DNA per plastid during chloroplast development in maize. J Mol Biol 344:1311–1330

    Google Scholar 

  17. von Zychlinski A, Kleffmann T, Krishnamurthy N et al (2005) Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions. Mol Cell Proteomics 4:1072–1084

    Google Scholar 

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Acknowledgement

This research was supported by Grants-in-Aid for Scientific Research (B) (22380186) and Scientific Research on Innovative Areas (22114507) from the Ministry of Education, Culture, Sports, Science and Technology, Japan.

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Shiraya, T., Kaneko, K., Mitsui, T. (2014). Quantitative Proteomic Analysis of Intact Plastids. In: Jorrin-Novo, J., Komatsu, S., Weckwerth, W., Wienkoop, S. (eds) Plant Proteomics. Methods in Molecular Biology, vol 1072. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-631-3_32

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  • DOI: https://doi.org/10.1007/978-1-62703-631-3_32

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-630-6

  • Online ISBN: 978-1-62703-631-3

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