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Plant Proteomics: From Genome Sequencing to Proteome Databases and Repositories

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Plant Proteomics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1072))

Abstract

Proteomic approaches are useful for the identification of functional proteins. These have been enhanced not only by the development of proteomic techniques but also in concert with genome sequencing. In this chapter, 30 databases and Web sites relating to plant proteomics are reviewed and recent technologies relating to data collection and annotation are surveyed.

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Abbreviations

EST:

Expressed sequence tag

MS:

Mass spectrometry

n-DE:

n-Dimensional electrophoresis

SDS-PAGE:

Sodium dodecyl sulfate-polyacrylamide gel electrophoresis

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Author information

Authors and Affiliations

  1. Maebashi Institute of Technology, Maebashi, Japan

    Katsumi Sakata

  2. National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Japan

    Setsuko Komatsu

Authors
  1. Katsumi Sakata
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  2. Setsuko Komatsu
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Editor information

Editors and Affiliations

  1. Dept of Biochem & Molecular Bio, University of Cordoba, Cordoba, Spain

    Jesus V. Jorrin-Novo

  2. University of Tsukuba National Institute of Crop Science, Tsukuba, Japan

    Setsuko Komatsu

  3. Molecular Systems Biology, University of Vienna, Vienna, Austria

    Wolfram Weckwerth

  4. Dept. Molecular Systems Biology, University of Vienna, Vienna, Austria

    Stefanie Wienkoop

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Sakata, K., Komatsu, S. (2014). Plant Proteomics: From Genome Sequencing to Proteome Databases and Repositories. In: Jorrin-Novo, J., Komatsu, S., Weckwerth, W., Wienkoop, S. (eds) Plant Proteomics. Methods in Molecular Biology, vol 1072. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-631-3_3

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  • DOI: https://doi.org/10.1007/978-1-62703-631-3_3

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-630-6

  • Online ISBN: 978-1-62703-631-3

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