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Quantitative Analysis of Cellular Lipids by Nano-Electrospray Ionization Mass Spectrometry

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1033))

Abstract

Lipid analysis performed by nano-electrospray ionization mass spectrometry is a highly sensitive method for quantification of lipids including all lipid species of a given lipid class. Various instrumental setups are used for quantitative lipid analysis, including different modes of ionization, separation, and detection. Here we describe a work-flow for the rapid and quantitative analysis of lipid species from cellular membranes by direct infusion of lipid extracts to a nano-electrospray ionization triple quadrupole/linear ion trap mass spectrometer.

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References

  1. Han X, Yang K, Gross RW (2012) Multi-dimensional mass spectrometry-based shotgun lipidomics and novel strategies for lipidomic analyses. Mass Spectrom Rev 31:134–178

    Article  PubMed  CAS  Google Scholar 

  2. Ivanova PT, Milne SB, Myers DS et al (2009) Lipidomics: a mass spectrometry based systems level analysis of cellular lipids. Curr Opin Chem Biol 13:526–531

    Article  PubMed  CAS  Google Scholar 

  3. Merrill AH Jr, Sullards MC, Allegood JC et al (2005) Sphingolipidomics: high-throughput, structure-specific, and quantitative analysis of sphingolipids by liquid chromatography tandem mass spectrometry. Methods 36: 207–224

    Article  PubMed  CAS  Google Scholar 

  4. Murphy RC, Gaskell SJ (2011) New applications of mass spectrometry in lipid analysis. J Biol Chem 286:25427–25433

    Article  PubMed  CAS  Google Scholar 

  5. Shevchenko A, Simons K (2010) Lipidomics: coming to grips with lipid diversity. Nat Rev Mol Cell Biol 11:593–598

    Article  PubMed  CAS  Google Scholar 

  6. Wenk MR (2010) Lipidomics: new tools and applications. Cell 143:888–895

    Article  PubMed  CAS  Google Scholar 

  7. Han X, Gross RW (2003) Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: a bridge to lipidomics. J Lipid Res 44: 1071–1079

    Article  PubMed  CAS  Google Scholar 

  8. Han X, Gross RW (2005) Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. Mass Spectrom Rev 24:367–412

    Article  PubMed  CAS  Google Scholar 

  9. Ejsing CS, Duchoslav E, Sampaio J et al (2006) Automated identification and quantification of glycerophospholipid molecular species by multiple precursor ion scanning. Anal Chem 78:6202–6214

    Article  PubMed  CAS  Google Scholar 

  10. Hartler J, Trotzmuller M, Chitraju C et al (2011) Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data. Bioinformatics 27:572–577

    Article  PubMed  CAS  Google Scholar 

  11. Pietilainen KH, Sysi-Aho M, Rissanen A et al (2007) Acquired obesity is associated with changes in the serum lipidomic profile independent of genetic effects—a monozygotic twin study. PLoS One 2:e218

    Article  PubMed  Google Scholar 

  12. Schwudke D, Oegema J, Burton L et al (2006) Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. Anal Chem 78:585–595

    Article  PubMed  CAS  Google Scholar 

  13. Köfeler HC, Fauland A, Rechberger GN et al (2012) Mass spectrometry based lipidomics: an overview of technological platforms. Metabolites 2:19–38

    Article  Google Scholar 

  14. Herzog R, Schuhmann K, Schwudke D et al (2012) LipidXplorer: a software for consensual cross-platform lipidomics. PLoS One 7:e29851

    Article  PubMed  CAS  Google Scholar 

  15. Herzog R, Schwudke D, Schuhmann K et al (2011) A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol 12:R8

    Article  PubMed  CAS  Google Scholar 

  16. Haag M, Schmidt A, Sachsenheimer T et al (2012) Quantification of signaling lipids by nano-ESI MS/MS. Metabolites 2:57–76

    Article  CAS  Google Scholar 

  17. Matyash V, Liebisch G, Kurzchalia TV et al (2008) Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics. J Lipid Res 49:1137–1146

    Article  PubMed  CAS  Google Scholar 

  18. Sampaio JL, Gerl MJ, Klose C et al (2011) Membrane lipidome of an epithelial cell line. Proc Natl Acad Sci USA 108:1903–1907

    Article  PubMed  CAS  Google Scholar 

  19. Koivusalo M, Haimi P, Heikinheimo L et al (2001) Quantitative determination of phospholipid compositions by ESI-MS: effects of acyl chain length, unsaturation, and lipid concentration on instrument response. J Lipid Res 42:663–672

    PubMed  Google Scholar 

  20. Brügger B, Erben G, Sandhoff R et al (1997) Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry. Proc Natl Acad Sci USA 94:2339–2344

    Article  PubMed  Google Scholar 

  21. Gray A, Olsson H, Batty IH et al (2003) Nonradioactive methods for the assay of phosphoinositide 3-kinases and phosphoinositide phosphatases and selective detection of signaling lipids in cell and tissue extracts. Anal Biochem 313:234–245

    Article  PubMed  CAS  Google Scholar 

  22. Ejsing CS, Sampaio JL, Surendranath V et al (2009) Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci USA 106:2136–2141

    Article  PubMed  CAS  Google Scholar 

  23. Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37:911–917

    Article  PubMed  CAS  Google Scholar 

  24. Sandhoff R, Brügger B, Jeckel D et al (1999) Determination of cholesterol at the low picomole level by nano-electrospray ionization tandem mass spectrometry. J Lipid Res 40: 126–132

    PubMed  CAS  Google Scholar 

  25. Liebisch G, Binder M, Schifferer R et al (2006) High throughput quantification of cholesterol and cholesteryl ester by electrospray ionization tandem mass spectrometry (ESI-MS/MS). Biochim Biophys Acta 1761:121–128

    Article  PubMed  CAS  Google Scholar 

  26. Rouser G, Fkeischer S, Yamamoto A (1970) Two dimensional then layer chromatographic separation of polar lipids and determination of phospholipids by phosphorus analysis of spots. Lipids 5:494–496

    Article  PubMed  CAS  Google Scholar 

  27. Silversand C, Haux C (1997) Improved high-performance liquid chromatographic method for the separation and quantification of lipid classes: application to fish lipids. J Chromatogr B Biomed Sci Appl 703:7–14

    Article  PubMed  CAS  Google Scholar 

  28. Han X, Gross RW (2001) Quantitative analysis and molecular species fingerprinting of triacylglyceride molecular species directly from lipid extracts of biological samples by electrospray ionization tandem mass spectrometry. Anal Biochem 295:88–100

    Article  PubMed  CAS  Google Scholar 

  29. Han X, Yang J, Cheng H et al (2004) Toward fingerprinting cellular lipidomes directly from biological samples by two-dimensional electrospray ionization mass spectrometry. Anal Biochem 330:317–331

    Article  PubMed  CAS  Google Scholar 

  30. Fahy E, Subramaniam S, Murphy RC et al (2009) Update of the LIPID MAPS comprehensive classification system for lipids. J Lipid Res 50:S9–S14

    Article  PubMed  Google Scholar 

  31. Quehenberger O, Armando AM, Brown AH et al (2010) Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res 51:3299–3305

    Article  PubMed  CAS  Google Scholar 

  32. Schuhmann K, Almeida R, Baumert M et al (2012) Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes. J Mass Spectrom 47:96–104

    Article  PubMed  CAS  Google Scholar 

  33. Gerl MJ, Sampaio JL, Urban S et al (2012) Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane. J Cell Biol 196:213–221

    Article  PubMed  CAS  Google Scholar 

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Acknowledgment

This work was supported by a grant of the Deutsche Forschungsgemeinschaft (SFB/TRR83). B.B. is an investigator of the CellNetworks Cluster of Excellence (EXC81).

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Özbalci, C., Sachsenheimer, T., Brügger, B. (2013). Quantitative Analysis of Cellular Lipids by Nano-Electrospray Ionization Mass Spectrometry. In: Rapaport, D., Herrmann, J. (eds) Membrane Biogenesis. Methods in Molecular Biology, vol 1033. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-487-6_1

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  • DOI: https://doi.org/10.1007/978-1-62703-487-6_1

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-486-9

  • Online ISBN: 978-1-62703-487-6

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