Skip to main content

A Method to Encapsulate Molecular Cargo Within DNA Icosahedra

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 991))

Abstract

DNA self-assembly has yielded various polyhedra based on platonic solids. DNA polyhedra can act as nanocapsules by entrapping various molecular entities from solution and could possibly find use in targeted delivery within living systems. A key requirement for encapsulation is that the polyhedron should have maximal encapsulation volume while maintaining minimum pore size. It is well known that platonic solids possess maximal encapsulation volumes. We therefore constructed an icosahedron from DNA using a modular self-assembly strategy. We describe a method to determine the functionality of DNA polyhedra as nanocapsules by encapsulating different cargo such as gold nanoparticles and functional biomolecules like FITC dextran from solution within DNA icosahedra.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Holliday BJ, Mirkin CA (2001) Strategies for the construction of supramolecular ­compounds through coordination chemistry. Angew Chem Int Ed Engl 40:2022–2043

    Article  CAS  Google Scholar 

  2. Goodman RP, Schaap IA, Tardin CF, Erben CM, Berry RM, Schmidt CF, Turberfield AJ (2005) Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication. Science 310:1661–1665

    Article  CAS  Google Scholar 

  3. He Y, Ye T, Su M, Zhang C, Ribbe AE, Jiang W, Mao C (2008) Hierarchical self-assembly of DNA into symmetric ­supramolecular polyhedra. Nature 452:198–202

    Article  CAS  Google Scholar 

  4. Douglas SM, Dietz H, Liedl T, Högberg B, Graf F, Shih WM (2009) Self-assembly of DNA into nanoscale three-dimensional shapes. Nature 459:414–418

    Article  CAS  Google Scholar 

  5. Bhatia D, Mehtab S, Krishnan R, Indi SS, Basu A, Krishnan Y (2009) Icosahedral DNA nanocapsules by modular assembly. Angew Chem Int Ed Engl 48:4134–4137

    Article  CAS  Google Scholar 

  6. Bhatia D, Surana S, Chakraborty S, Koushika SP, Krishnan Y (2011) A synthetic, icosahedral DNA-based host-cargo complex for functional in vivo imaging. Nat Commun 2:339. doi:10.1038/ncomms1337

    Google Scholar 

  7. Ghodke HB, Krishnan R, Vignesh K, Kumar GV, Narayana C, Krishnan Y (2007) The I-tetraplex building block: rational design and controlled fabrication of robust 1D DNA scaffolds via non-Watson Crick self-assembly. Angew Chem Int Ed Engl 46:2646–2649

    Article  CAS  Google Scholar 

  8. Mirkin CA (2000) Programming the assembly of two- and three-dimensional architectures with DNA and nanoscale inorganic building blocks. Inorg Chem 39:2258–2272

    Article  CAS  Google Scholar 

  9. Lakowicz JR, Weber G (1973) Quenching of fluorescence by oxygen: probe for structural fluctuations in macromolecules. Biochemistry 12:4161–4170

    Article  CAS  Google Scholar 

  10. Lakowicz JR (2006) Principles of fluorescence spectroscopy, 3rd edn. Springer, New York, pp 353–380

    Book  Google Scholar 

Download references

Acknowledgments

We thank Dr. S.S. Indi and Dr. Atanu Basu at Department of Microbiology and Cell Biology, IISc and NIV, Pune, respectively, for providing electron microscopy facilities, Prof. Dipanker Chatterji, MBU, IISc for use of the lifetime instrument. D.B., S.M., and S.C. thank CSIR, Government of India (GoI) for research fellowships. This work was funded by the Nano Science and Technology Initiative, DST, GoI, and the Innovative Young Biotechnologist Award, DBT (GoI) to Y.K.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer Science+Business Media New York

About this protocol

Cite this protocol

Bhatia, D., Chakraborty, S., Mehtab, S., Krishnan, Y. (2013). A Method to Encapsulate Molecular Cargo Within DNA Icosahedra. In: Weissig, V., Elbayoumi, T., Olsen, M. (eds) Cellular and Subcellular Nanotechnology. Methods in Molecular Biology, vol 991. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-336-7_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-62703-336-7_8

  • Published:

  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-335-0

  • Online ISBN: 978-1-62703-336-7

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics