Abstract
Histone posttranslational modifications (PTMs) are highly important molecular determinants of epigenetic regulatory mechanisms. Histone PTMs associated with nucleosomes are intimately tied to the transcriptional activity or silence of genes. In addition, nucleosomal PTMs participate in the organization of chromatin into higher-order structures and the progression through mitosis. Changes in histone PTMs are also regulated during the course of mammalian development and are altered in pathological states including cancer. Histone acetyl modifications (and also methylation and phosphorylation) are frequently assayed by western blotting (WB), mass spectrometry (MS), and chromatin immunoprecipitation (ChIP). Here we show that an enzyme-linked immunosorbent assay performed on nucleosomes (NU-ELISA) can quickly and effectively yield quantitative detection of global levels of histone acetylation on small samples such as single human embryonic stem cell colonies. The microscale NU-ELISA method presented here can be performed in most laboratories equipped with basic instrumentation for molecular and cellular biology.
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Balasubramanian S, Verner E, Buggy JJ (2009) Isoform-specific histone deacetylase inhibitors: the next step? Cancer Lett 280:211–221
Bieliauskas AV, Pflum MK (2008) Isoform-selective histone deacetylase inhibitors. Chem Soc Rev 37:1402–1413
Butler KV, Kozikowski AP (2008) Chemical origins of isoform selectivity in histone deacetylase inhibitors. Curr Pharm Des 14:505–528
Dai B, Rasmussen TP (2007) Global epiproteomic signatures distinguish embryonic stem cells from differentiated cells. Stem Cells 25:2567–2574
Han J, Sachdev PS, Sidhu KS (2010) A combined epigenetic and non-genetic approach for reprogramming human somatic cells. PLoS One 5:e12297
Huangfu D, Osafune K, Maehr R, Guo W, Eijkelenboom A, Chen S, Muhlestein W, Melton DA (2008) Induction of pluripotent stem cells from primary human fibroblasts with only Oct4 and Sox2. Nat Biotechnol 26:1269–1275
Huangfu D, Maehr R, Guo W, Eijkelenboom A, Snitow M, Chen AE, Melton DA (2008) Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds. Nat Biotechnol 26:795–797
Pilarsky C, Wenzig M, Specht T, Saeger HD, Grutzmann R (2004) Identification and validation of commonly overexpressed genes in solid tumors by comparison of microarray data. Neoplasia 6:744–750
Weichert W, Roske A, Niesporek S, Noske A, Buckendahl AC, Dietel M, Gekeler V, Boehm M, Beckers T, Denkert C (2008) Class I histone deacetylase expression has independent prognostic impact in human colorectal cancer: specific role of class I histone deacetylases in vitro and in vivo. Clin Cancer Res 14:1669–1677
Godman CA, Joshi R, Tierney BR, Greenspan E, Rasmussen TP, Wang HW, Shin DG, Rosenberg DW, Giardina C (2008) HDAC3 impacts multiple oncogenic pathways in colon cancer cells with effects on Wnt and vitamin D signaling. Cancer Biol Ther 7:1570–1580
Seligson DB, Horvath S, McBrian MA, Mah V, Yu H, Tze S, Wang Q, Chia D, Goodglick L, Kurdistani SK (2009) Global levels of histone modifications predict prognosis in different cancers. Am J Pathol 174:1619–1628
Seligson DB, Horvath S, Shi T, Yu H, Tze S, Grunstein M, Kurdistani SK (2005) Global histone modification patterns predict risk of prostate cancer recurrence. Nature 435:1262–1266
Dashwood RH, Myzak MC, Ho E (2006) Dietary HDAC inhibitors: time to rethink weak ligands in cancer chemoprevention? Carcinogenesis 27:344–349
Nian H, Delage B, Ho E, Dashwood RH (2009) Modulation of histone deacetylase activity by dietary isothiocyanates and allyl sulfides: studies with sulforaphane and garlic organosulfur compounds. Environ Mol Mutagen 50:213–221
Halili MA, Andrews MR, Sweet MJ, Fairlie DP (2009) Histone deacetylase inhibitors in inflammatory disease. Curr Top Med Chem 9:309–319
Dai B, Dahmani F, Cichocki JA, Swanson LC, Rasmussen TP (2011) Detection of post-translational modifications on native intact nucleosomes by ELISA. J Vis Exp. doi:3791/2593
Acknowledgments
This study was supported by the Connecticut Stem Cell Research Grants 06SCA34 and 09-SCB-UCON-18. This material is based upon work supported by the state of Connecticut under the Connecticut Stem Cell Research Grants Program. Its contents are solely the responsibility of the authors and do not necessarily represent the official views of the state of Connecticut, the Department of Public Health of the State of Connecticut, or Connecticut Innovations, Inc.
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Dai, B., Giardina, C., Rasmussen, T.P. (2013). Quantitation of Nucleosome Acetylation and Other Histone Posttranslational Modifications Using Microscale NU-ELISA. In: Hake, S., Janzen, C. (eds) Protein Acetylation. Methods in Molecular Biology, vol 981. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-305-3_13
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DOI: https://doi.org/10.1007/978-1-62703-305-3_13
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Publisher Name: Humana Press, Totowa, NJ
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