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The Model Organism Dictyostelium discoideum

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Book cover Dictyostelium discoideum Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 983))

Abstract

Much of our knowledge of molecular cellular functions is based on studies with a few number of model organisms that were established during the last 50 years. The social amoeba Dictyostelium discoideum is one such model, and has been particularly useful for the study of cell motility, chemotaxis, phagocytosis, endocytic vesicle traffic, cell adhesion, pattern formation, caspase-independent cell death, and, more recently, autophagy and social evolution. As nonmammalian model of human diseases D. discoideum is a newcomer, yet it has proven to be a powerful genetic and cellular model for investigating host–pathogen interactions and microbial infections, for mitochondrial diseases, and for pharmacogenetic studies. The D. discoideum genome harbors several homologs of human genes responsible for a variety of diseases, ­including Chediak-Higashi syndrome, lissencephaly, mucolipidosis, Huntington disease, IBMPFD, and Shwachman-Diamond syndrome. A few genes have already been studied, providing new insights on the mechanism of action of the encoded proteins and in some cases on the defect underlying the disease. The opportunities offered by the organism and its place among the nonmammalian models for human diseases will be discussed.

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References

  1. Kessin RH (2001) Dictyostelium - Evolution, cell biology, and the development of multicellularity. Cambridge Univ Press, Cambridge

    Book  Google Scholar 

  2. Chisholm RL, Firtel RA (2004) Insights into morphogenesis from a simple developmental system. Nat Rev Mol Cell Biol 5:531–541

    Article  CAS  PubMed  Google Scholar 

  3. Eichinger L, Rivero F (2006) Dictyostelium discoideum protocols Methods in Molecular Biology. Humana, Totowa, NJ

    Google Scholar 

  4. Urushihara H (2006) Cultivation, spore production, and mating. Methods Mol Biol 346:113–124

    PubMed  Google Scholar 

  5. Gerisch G, Albrecht R, Heizer C, Hodgkinson S, Maniak M (1995) Chemoattractant-controlled accumulation of coronin at the leading edge of Dictyostelium cells monitored using green fluorescent protein-coronin fusion protein. Curr Biol 5:1280–1285

    Article  CAS  PubMed  Google Scholar 

  6. Kuspa A, Loomis WF (1992) Tagging developmental genes in Dictyostelium by restriction enzyme-mediated integration of plasmid DNA. Proc Natl Acad Sci U S A 89:8803–8807

    Article  CAS  PubMed  Google Scholar 

  7. Faix J, Kreppel L, Shaulsky G, Schleicher M, Kimmel AR (2004) A rapid and efficient method to generate multiple gene disruptions in Dictyostelium discoideum using a single selectable marker and the Cre-loxP system. Nucleic Acids Res 32:E143

    Article  PubMed  Google Scholar 

  8. Linkner J, Nordholz B, Junemann A, Winterhoff M, Faix J (2012) Highly effective removal of floxed Blasticidin S resistance cassettes from Dictyostelium discoideum mutants by extrachromosomal expression of Cre. Eur J Cell Biol 91:156–160

    Article  CAS  PubMed  Google Scholar 

  9. Shaulsky G, Escalante R, Loomis WF (1996) Developmental signal transduction pathways uncovered by genetic suppressors. Proc Natl Acad Sci U S A 93:15260–15265

    Article  CAS  PubMed  Google Scholar 

  10. Kuspa A (2006) Restriction enzyme-mediated integration (REMI) mutagenesis. Methods Mol Biol 346:201–209

    CAS  PubMed  Google Scholar 

  11. Kuhlmann M, Popova B, Nellen W (2006) RNA interference and antisense-mediated gene silencing in Dictyostelium. Methods Mol Biol 346:211–226

    PubMed  Google Scholar 

  12. Robinson DN, Spudich JA (2000) Dynacortin, a genetic link between equatorial contractility and global shape control discovered by library complementation of a Dictyostelium discoideum cytokinesis mutant. J Cell Biol 150:823–838

    Article  CAS  PubMed  Google Scholar 

  13. Eichinger L, Pachebat JA, Glöckner G, Rajandream MA, Sucgang R, Berriman M, Song J, Olsen R, Szafranski K, Xu Q, Tunggal B, Kummerfeld S, Madera M, Konfortov BA, Rivero F, Bankier AT, Lehmann R, Hamlin N, Davies R, Gaudet P, Fey P, Pilcher K, Chen G, Saunders D, Sodergren E, Davis P, Kerhornou A, Nie X, Hall N, Anjard C, Hemphill L, Bason N, Farbrother P, Desany B, Just E, Morio T, Rost R, Churcher C, Cooper J, Haydock S, van Driessche N, Cronin A, Goodhead I, Muzny D, Mourier T, Pain A, Lu M, Harper D, Lindsay R, Hauser H, James K, Quiles M, Madan Babu M, Saito T, Buchrieser C, Wardroper A, Felder M, Thangavelu M, Johnson D, Knights A, Loulseged H, Mungall K, Oliver K, Price C, Quail M, Urushihara H, Hernandez J, Rabbinowitsch E, Steffen D, Sanders M, Ma J, Kohara Y, Sharp S, Simmonds M, Spiegler S, Tivey A, Sugano S, White B, Waler D, Woodward J, Winckler T, Tanaka Y, Shaulsky G, Schleicher M, Weinstock G, Rosenthal A, Cox E, Chisholm R, Gibbs R, Loomis W, Platzer M, Kay R, Williams J, Dear PH, Noegel A, Barrell B, Kuspa A (2005) The genome of the social amoeba Dictyostelium discoideum. Nature 435:43–57

    Article  CAS  PubMed  Google Scholar 

  14. Olsen RM (2005) How many protein encoding genes does Dictyostelium discoideum have? In: Loomis WF, Kuspa A (eds) Dictyostelium genomics. Horizon Bioscience, Wymondham, pp 265–278

    Google Scholar 

  15. Snyder MKA (2002) Yeast genomics: past, present and future promise. Funct Integr Genomics 2:135–137

    Article  CAS  PubMed  Google Scholar 

  16. Hahn MW, Han HM, Han SG (2007) Gene family evolution across 12 Drosophila genomes. PLoS Genet 3:e197

    Article  PubMed  CAS  Google Scholar 

  17. Urushihara H, Morio T, Tanaka Y (2006) The cDNA sequencing project. Methods Mol Biol 346:31–49

    CAS  PubMed  Google Scholar 

  18. Kawata T, Shevchenko A, Fukuzawa M, Jermyn KA, Totty NF, Zhukovskaya NV, Sterling AE, Mann M, Williams JG (1997) SH2 signaling in a lower eukaryote: a STAT protein that regulates stalk cell differentiation in Dictyostelium. Cell 89:909–916

    Article  CAS  PubMed  Google Scholar 

  19. Kawata T (2011) STAT signaling in Dictyostelium development. Dev Growth Differ 53:548–557

    Article  CAS  PubMed  Google Scholar 

  20. Kay RR (1998) The biosynthesis of differentiation-inducing factor, a chlorinated signal molecule regulating Dictyostelium development. J Biol Chem 273:2669–2675

    Article  CAS  PubMed  Google Scholar 

  21. Yoshihara T, Takahashi-Yanaga F, Shiraishi F, Morimoto S, Watanabe Y, Hirata M, Hoka S, Sasaguri T (2010) Anti-angiogenic effects of differentiation-inducing factor-1 involving VEGFR-2 expression inhibition independent of the Wnt/beta-catenin signaling pathway. Mol Cancer 9:245

    Article  PubMed  CAS  Google Scholar 

  22. Cai H, Devreotes PN (2011) Moving in the right direction: how eukaryotic cells migrate along chemical gradients. Semin Cell Dev Biol 22:834–841

    Article  CAS  PubMed  Google Scholar 

  23. Swaney KF, Huang CH, Devreotes PN (2010) Eukaryotic chemotaxis: a network of signaling pathways controls motility, directional sensing, and polarity. Annu Rev Biophys 39:265–289

    Article  CAS  PubMed  Google Scholar 

  24. Wang Y, Chen CL, Iijima M (2011) Signaling mechanisms for chemotaxis. Dev Growth Differ 53:495–502

    Article  CAS  PubMed  Google Scholar 

  25. Surcel A, Kee YS, Luo T, Robinson DN (2010) Cytokinesis through biochemical-mechanical feedback loops. Semin Cell Dev Biol 21:866–873

    Article  CAS  PubMed  Google Scholar 

  26. Bozzaro S, Bucci C, Steinert M (2008) Phagocytosis and host-pathogen interactions in Dictyostelium with a look at macrophages. Int Rev Cell Mol Biol 271:253–300

    Article  CAS  PubMed  Google Scholar 

  27. Maniak M (2003) Fusion and fission events in the endocytic pathway of Dictyostelium. Traffic 4:1–5

    Article  CAS  PubMed  Google Scholar 

  28. Rivero F (2008) Endocytosis and the actin cytoskeleton in Dictyostelium discoideum. Int Rev Cell Mol Biol 267:343–397

    Article  CAS  PubMed  Google Scholar 

  29. Siu CH, Sriskanthadevan S, Wang J, Hou L, Chen G, Xu X, Thomson A, Yang C (2011) Regulation of spatiotemporal expression of cell-cell adhesion molecules during development of Dictyostelium discoideum. Dev Growth Differ 53:518–527

    Article  CAS  PubMed  Google Scholar 

  30. Kowal AS, Chisholm RL (2011) Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion. Eukaryot Cell 10:662–671

    Article  CAS  PubMed  Google Scholar 

  31. Froquet R, Le Coadic M, Perrin J, Cherix N, Cornillon S, Cosson P (2012) TM9/Phg1 and SadA proteins control surface expression and stability of SibA adhesion molecules in Dictyostelium. Mol Biol Cell 23:679–686

    Article  CAS  PubMed  Google Scholar 

  32. Williams JG (2006) Transcriptional regulation of Dictyostelium pattern formation. EMBO Rep 7:694–698

    Article  CAS  PubMed  Google Scholar 

  33. Harwood AJ (2008) Dictyostelium development: a prototypic Wnt pathway? Methods Mol Biol 469:21–32

    Article  CAS  PubMed  Google Scholar 

  34. Chattwood A, Thompson CR (2011) Non-genetic heterogeneity and cell fate choice in Dictyostelium discoideum. Dev Growth Differ 53:558–566

    Article  CAS  PubMed  Google Scholar 

  35. Calvo-Garrido J, Carilla-Latorre S, Kubohara Y, Santos-Rodrigo N, Mesquita A, Soldati T, Golstein P, Escalante R (2010) Autophagy in Dictyostelium: genes and pathways, cell death and infection. Autophagy 6:686–701

    Article  CAS  PubMed  Google Scholar 

  36. Giusti C, Tresse E, Luciani MF, Golstein P (2008) Autophagic cell death: analysis in Dictyostelium. Biochim Biophys Acta 1793:1422–1431

    Article  PubMed  CAS  Google Scholar 

  37. Li SI, Purugganan MD (2011) The cooperative amoeba: Dictyostelium as a model for social evolution. Trends Genet 27:48–54

    Article  PubMed  CAS  Google Scholar 

  38. Strassmann JE, Queller DC (2011) Evolution of cooperation and control of cheating in a social microbe. Proc Natl Acad Sci U S A 108(Suppl 2):10855–10862

    Article  CAS  PubMed  Google Scholar 

  39. Konijn TM, van de Meene JGC, Bonner JT, Barkley DS (1967) The acrasin activity of adenosine-3’,5’-cyclic phosphate. Proc Natl Acad Sci U S A 58:1152–1154

    Article  CAS  PubMed  Google Scholar 

  40. Yoshimura T, Matsushima K, Tanaka S, Robinson EA, Appella E, Oppenheim JJ, Leonard EJ (1987) Purification of a human monocyte-derived neutrophil chemotactic factor that has peptide sequence similarity to other host defense cytokines. Proc Natl Acad Sci U S A 84:9233–9237

    Article  CAS  PubMed  Google Scholar 

  41. Klein PS, Sun TJ, Saxe CL III, Kimmel AR, Johnson RL, Devreotes PN (1988) A chemoattractant receptor controls development in Dictyostelium discoideum. Science 241:1467–1472

    Article  CAS  PubMed  Google Scholar 

  42. van Haastert PJM, Kesbeke F, Reymond CD, Firtel R, Luderus E, van Driel R (1987) Aberrant transmembrane signal transduction in Dictyostelium cells expressing a mutated ras gene. Proc Natl Acad Sci U S A 84:4905–4909

    Article  PubMed  Google Scholar 

  43. Newell PC, Europe-Finner GN, Small NV, Liu G (1988) Inositol phosphates. G-proteins and ras genes involved in chemotactic signal transduction of Dictyostelium. J Cell Sci 89:123–127

    CAS  PubMed  Google Scholar 

  44. Charest PG, Shen Z, Lakoduk A, Sasaki AT, Briggs SP, Firtel RA (2010) A Ras signaling complex controls the RasC-TORC2 pathway and directed cell migration. Dev Cell 18:737–749

    Article  CAS  PubMed  Google Scholar 

  45. Weeks G, Spiegelman GB (2003) Roles played by Ras subfamily proteins in the cell and developmental biology of microorganisms. Cell Signal 15:901–909

    Article  CAS  PubMed  Google Scholar 

  46. Meili R, Ellsworth C, Firtel RA (2000) A novel Akt/PKB-related kinase is essential for morphogenesis in Dictyostelium. Curr Biol 10:708–717

    Article  CAS  PubMed  Google Scholar 

  47. Iijima M, Devreotes P (2002) Tumor suppressor PTEN mediates sensing of chemoattractant gradients. Cell 109:599–610

    Article  CAS  PubMed  Google Scholar 

  48. Funamoto S, Meili R, Lee S, Parry L, Firtel RA (2002) Spatial and temporal regulation of 3-phosphoinositides by PI 3-kinase and PTEN mediates chemotaxis. Cell 109:611–623

    Article  CAS  PubMed  Google Scholar 

  49. Lee S, Comer FI, Sasaki A, McLeod IX, Duong Y, Okumura K, Yates JR, Parent CA, Firtel RA (2005) TOR complex 2 integrates cell movement during chemotaxis and signal relay in Dictyostelium. Mol Biol Cell 16:4572–4583

    Article  CAS  PubMed  Google Scholar 

  50. Kamimura Y, Xiong Y, Iglesias PA, Hoeller O, Bolourani P, Devreotes PN (2008) PIP3-independent activation of TorC2 and PKB at the cell’s leading edge mediates chemotaxis. Curr Biol 18:1034–1043

    Article  CAS  PubMed  Google Scholar 

  51. Ferrero E, Belloni D, Contini P, Foglieni C, Ferrero M, Fabbri M, Poggi A, Zocchi M (2003) Transendothelial migration leads to protection from starvation-induced apoptosis in CD34  +  CD14+ circulating precursors: evidence for PECAM-1 involvement through Atk/PKB activation. Blood 2003:186–193

    Article  CAS  Google Scholar 

  52. Fox J, Ung K, Tanlimco SG, Jirik FR (2002) Disruption of a single Pten allele augments the chemotactic response of B lymphocytes to stromal cell-derived factor-1. J Immunol 169:49–54

    CAS  PubMed  Google Scholar 

  53. Liu L, Das S, Losert W, Parent C (2010) mTORC2 regulates neutrophils chemotaxis in a cAMP- and RhoA-dependent fashion. Dev Cell 19:845–857

    Article  CAS  PubMed  Google Scholar 

  54. Beug H, Gerisch G, Kempff S, Riedel V, Cremer G (1970) Specific inhibition of cell contact formation in Dictyostelium by univalent antibodies. Exp Cell Res 63:147–158

    Article  CAS  PubMed  Google Scholar 

  55. Beug H, Katz FE, Gerisch G (1973) Dynamics in antigenic membrane sites relating to cell aggregation in Dictyostelium discoideum. J Cell Biol 56:647–658

    Article  CAS  PubMed  Google Scholar 

  56. Gerisch G, Krelle H, Bozzaro S, Eitle E, Guggenheim R (1980) Analysis of cell adhesion in Dictyostelium and Polysphondylium by the use of Fab. In: Curtis ASG, Pitts JD (eds) Cell adhesion and motility. Cambridge Univ. Press, Cambridge, pp 293–307

    Google Scholar 

  57. Brackenbury R, Thiéry J, Rutishauser U, Edelman G (1977) Adhesion among neural cells of the chick embryo. J Biol Chem 252:6385–6840

    Google Scholar 

  58. Hyafill F, Morello D, Babinet C, Jacob F (1980) A cell surface glycoprotein involved in the compaction of embryonal carcinoma cells and cleavage stage embryos. Cell 21:927–934

    Article  Google Scholar 

  59. Medalia O, Weber I, Frangakis AS, Nicastro D, Gerisch G, Baumeister W (2002) Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography. Science 298:1209–1213

    Article  CAS  PubMed  Google Scholar 

  60. Benoit M, Gabriel D, Gerisch G, Gaub HE (2000) Discrete interactions in cell adhesion measured by single-molecule force spectroscopy. Nat Cell Biol 2:313–317

    Article  CAS  PubMed  Google Scholar 

  61. Zhang X, Wojcikiewicz E, Moy V (2002) Force spectroscopy of the leukocyte function-associated antigen-1/intercellular adhesion molecule-1 interaction. Biophys J 83:2270–2279

    Article  CAS  PubMed  Google Scholar 

  62. Panorchan P, Thompson M, Davis K, Tseng Y, Konstantopoulos K, Wirtz D (2006) Single-molecule analysis of cadherin-mediated cell-cell adhesion. J Cell Sci 119:66–74

    Article  CAS  PubMed  Google Scholar 

  63. Hukkanen E, Wieland J, Gewirth A, Leckband D, Braatz R (2005) Multiple-bond kinetics from single-molecule pulling experiments: evidence for multiple NCAM bonds. Biophys J 89:3434–3445

    Article  CAS  PubMed  Google Scholar 

  64. Maniak M, Rauchenberger R, Albrecht R, Murphy J, Gerisch G (1995) Coronin involved in phagocytosis: dynamics of particle-induced relocalization visualized by a green fluorescent protein tag. Cell 83:915–924

    Article  CAS  PubMed  Google Scholar 

  65. Peracino B, Borleis J, Jin T, Westphal M, Schwartz JM, Wu LJ, Bracco E, Gerisch G, Devreotes P, Bozzaro S (1998) G protein beta subunit-null mutants are impaired in phagocytosis and chemotaxis due to inappropriate regulation of the actin cytoskeleton. J Cell Biol 141:1529–1537

    Article  CAS  PubMed  Google Scholar 

  66. Moores SL, Sabry JH, Spudich JA (1996) Myosin dynamics in live Dictyostelium cells. Proc Natl Acad Sci U S A 93:443–446

    Article  CAS  PubMed  Google Scholar 

  67. Westphal M, Jungbluth A, Heidecker M, Muhlbauer B, Heizer C, Schwartz JM, Marriott G, Gerisch G (1997) Microfilament dynamics during cell movement and chemotaxis monitored using a GFP-actin fusion protein. Curr Biol 7:176–183

    Article  CAS  PubMed  Google Scholar 

  68. Banjo L, Peng X, Schreiber A, Moore H, Trimble W, Grinstein S (2000) Focal exocytosis of VAMP-3-containing vesicles at sites of phagosome formation. J Cell Biol 249:697–706

    Google Scholar 

  69. Servant G, Weiner O, Neptune E, Sedat JW, Bourne H (1999) Dynamics of a ­ ­chemoattractant receptor in living neutrophils during chemotaxis. Mol Biol Cell 10:1163–1178

    CAS  PubMed  Google Scholar 

  70. Neujahr R, Albrecht R, Kohler J, Matzner M, Schwartz JM, Westphal M, Gerisch G (1998) Microtubule-mediated centrosome motility and the positioning of cleavage furrows in multinucleate myosin II-null cells. J Cell Sci 111:1227–1240

    CAS  PubMed  Google Scholar 

  71. Robinson DN (2010) 14-3-3, an integrator of cell mechanics and cytokinesis. Small GTPases 1:165–169

    Article  PubMed  Google Scholar 

  72. Faix J, Weber I, Mintert U, Kohler J, Lottspeich F, Marriott G (2001) Recruitment of cortexillin into the cleavage furrow is controlled by Rac1 and IQGAP-related proteins. EMBO J 20:3705–3715

    Article  CAS  PubMed  Google Scholar 

  73. Kosta A, Roisin-Bouffay C, Luciani MF, Otto GP, Kessin RH, Golstein P (2004) Autophagy gene disruption reveals a non-vacuolar cell death pathway in Dictyostelium. J Biol Chem 279:48404–48409

    Article  CAS  PubMed  Google Scholar 

  74. Giusti C, Luciani MF, Klein G, Aubry L, Tresse E, Kosta A, Golstein P (2009) Necrotic cell death: from reversible mitochondrial uncoupling to irreversible lysosomal permeabilization. Exp Cell Res 315:26–38

    Article  CAS  PubMed  Google Scholar 

  75. Spudich J (1974) Biochemical and structural studies of actomyosin-like proteins from non-muscle cells. 2. Purification, properties and membrane association of actin from amoebae of Dictyostelium discoideum. J Biol Chem 249:6013–6020

    CAS  PubMed  Google Scholar 

  76. Clarke M, Spudich J (1974) Biochemical and structural studies of actomyosin-like proteins from non-muscle cells. Isolation and characterization of myosin from amoebae of Dictyostelium discoideum. J Mol Biol 86:209–222

    Article  CAS  PubMed  Google Scholar 

  77. Noegel AA, Schleicher M (2000) The actin cytoskeleton of Dictyostelium: a story told by mutants. J Cell Sci 113:759–766

    CAS  PubMed  Google Scholar 

  78. de Hostos EL, Bradtke B, Lottspeich F, Guggenheim R, Gerisch G (1991) Coronin, an actin binding protein of Dictyostelium discoideum localized to cell surface projections, has sequence similarities to G protein beta subunits. EMBO J 10:4097–4104

    PubMed  Google Scholar 

  79. Shina MC, Noegel AA (2008) Invertebrate coronins. Subcell Biochem 48:88–97

    Article  PubMed  Google Scholar 

  80. Bear JE, Rawls JF, Saxe CL III (1998) SCAR, a WASP-related protein, isolated as a suppressor of receptor defects in late Dictyostelium development. J Cell Biol 142:1325–1335

    Article  CAS  PubMed  Google Scholar 

  81. Fechheimer M, Taylor DL (1984) Isolation and characterization of a 30,000-dalton calcium-sensitive actin cross-linking protein from Dictyostelium discoideum. J Biol Chem 259:4514–4520

    CAS  PubMed  Google Scholar 

  82. Côté GP, Albanesi JP, Ueno T, Hammer JA III, Korn ED (1985) Purification from Dictyostelium discoideum of a low-molecular weight myosin that resembles myosin I from Acanthamoeba castellanii. J Biol Chem 260:4543–4546

    PubMed  Google Scholar 

  83. De Lozanne A, Spudich JA (1987) Disruption of the Dictyostelium myosin heavy chain gene by homologous recombination. Science 236:1086–1091

    Article  PubMed  Google Scholar 

  84. Knecht DA, Loomis WF (1987) Antisense RNA inactivation of myosin heavy chain gene expression in Dictyostelium discoideum. Science 236:1081–1085

    Article  CAS  PubMed  Google Scholar 

  85. Manstein DJ (2004) Molecular engineering of myosin. Phil Trans R Soc Lond B 359:1907–1912

    Article  CAS  Google Scholar 

  86. Jung G, Titus MA, Hammer JA III (2009) The Dictyostelium type V myosin MyoJ is responsible for the cortical association and motility of contractile vacuole membranes. J Cell Biol 186:555–570

    Article  CAS  PubMed  Google Scholar 

  87. Moen RJ, Johnsrud DO, Thomas DD, Titus MA (2011) Characterization of a myosin VII MyTH/FERM domain. J Mol Biol 413:17–23

    Article  CAS  PubMed  Google Scholar 

  88. Dames SA, Junemann A, Sass HJ, Schonichen A, Stopschinski BE, Grzesiek S, Faix J, Geyer M (2011) Structure, dynamics, lipid binding, and physiological relevance of the putative GTPase-binding domain of Dictyostelium formin C. J Biol Chem 286:36907–36920

    Article  CAS  PubMed  Google Scholar 

  89. Faix J, Grosse R (2006) Staying in shape with formins. Dev Cell 10:693–706

    Article  CAS  PubMed  Google Scholar 

  90. Carnell M, Zech T, Calaminus SD, Ura S, Hagedorn M, Johnston SA, May RC, Soldati T, Machesky LM, Insall RH (2011) Actin polymerization driven by WASH causes V-ATPase retrieval and vesicle neutralization before exocytosis. J Cell Biol 193:831–839

    Article  CAS  PubMed  Google Scholar 

  91. Gerisch G, Weber I (2007) Toward the structure of dynamic membrane-anchored actin networks: an approach using cryo-electron tomography. Cell Adh Migr 1:145–148

    Article  PubMed  Google Scholar 

  92. Xiong H, Rivero F, Euteneuer U, Mondal S, Mana-Capelli S, Larochelle D, Vogel A, Gassen B, Noegel AA (2008) Dictyostelium Sun-1 connects the centrosome to chromatin and ensures genome stability. Traffic 9:708–724

    Article  CAS  PubMed  Google Scholar 

  93. Gräf R, Daunderer C, Schulz I (2004) Molecular and functional analysis of the Dictyostelium centrosome. Int Rev Cytol 241:155–202

    Article  PubMed  Google Scholar 

  94. Samereier M, Meyer I, Koonce MP, Gräf R (2010) Live cell-imaging techniques for analyses of microtubules in Dictyostelium. Methods Cell Biol 97:341–357

    Article  CAS  PubMed  Google Scholar 

  95. de Keijzer S, Galloway J, Harms GS, Devreotes PN, Iglesias PA (2011) Disrupting microtubule network immobilizes amoeboid chemotactic receptor in the plasma membrane. Biochim Biophys Acta 1808:1701–1708

    Article  PubMed  CAS  Google Scholar 

  96. Koonce MP, Khodjakov A (2002) Dynamic microtubules in Dictyostelium. J Muscle Res Cell Motil 23:613–619

    Article  CAS  PubMed  Google Scholar 

  97. Odom D, Dowell R, Jacobsen E, Gordon W, Danford T, MacIsaac K, Rolfe P, Conboy C, Gifford D, Fraenkel E (2007) Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat Genet 39:730–732

    Article  CAS  PubMed  Google Scholar 

  98. de Jong M, Maina T (2010) Of mice and humans: are they the same? – Implications in cancer translational research. J Nucl Med 51:501–504

    Article  PubMed  Google Scholar 

  99. Suntharalingam G, Perry M, Ward S, Brett S, Castello-Cortes A, Brunner M, Panoskaltsis N (2006) Cytokine storm in a phase 1 trial of the anti-CD28 monoclonal antibody TGN1412. N Engl J Med 355:1018–1028

    Article  CAS  PubMed  Google Scholar 

  100. Eastwood D, Findlay L, Poole S, Bird C, Wadhwa M, Moore M, Burns C, Thorpe R, Stebbings R (2010) Monoclonal antibody TGN1412 trial failure explained by species differences in CD28 expression on CD4+ effector memory T-cells. Br J Pharmacol 161:516–526

    Article  CAS  Google Scholar 

  101. Pallardy M, Huenig T (2010) Primate testing of TGN1412: right target, wrong cell. Br J Pharmacol 161:509–511

    Article  CAS  PubMed  Google Scholar 

  102. Attarwala H (2010) TGN1412: from discovery to disaster. J Young Pharm 2:332–336

    Article  CAS  PubMed  Google Scholar 

  103. Danilenko D, Wang H (2012) The Yin and Yang of immunomodulatory biologics: assessing the delicate balance between benefit and risk. Toxicol Pathol 40:272–287

    Article  CAS  PubMed  Google Scholar 

  104. Knight A (2007) Systematic reviews of animal experiments demonstrate poor human clinical and toxicological utility. Altern Lab Anim 35:641–659

    CAS  PubMed  Google Scholar 

  105. Bastow E, Gourlay C, Tuite M (2011) Using yeast models to probe the molecular basis of amyotrophic lateral sclerosis. Biochem Soc Trans 39:1482–1487

    Article  CAS  PubMed  Google Scholar 

  106. Jing L, Zon L (2011) Zebrafish as a model for normal and malignant hematopoiesis. Dis Model Mech 4:433–438

    Article  CAS  PubMed  Google Scholar 

  107. Pandey U, Nichols C (2011) Human disease models in Drosophila melanogaster and the role of the fly in therapeutic drug discovery. Pharmacol Rev 63:411–436

    Article  CAS  PubMed  Google Scholar 

  108. Dimitriadi M, Hart A (2010) Neurodegenerative disorders: insights from the nematode Caenorhabditis elegans. Neurobiol Dis 40:4–11

    Article  CAS  PubMed  Google Scholar 

  109. Saxe CL (1999) Insights from model systems. Learning from the slime mold: Dictyostelium and human disease. Am J Hum Genet 65:25–30

    Article  CAS  PubMed  Google Scholar 

  110. Rehberg M, Kleylein-Sohn J, Faix J, Ho TH, Schulz I, Gräf R (2005) Dictyostelium LIS1 is a centrosomal protein required for microtubule/cell cortex interactions, nucleus/centrosome linkage, and actin dynamics. Mol Biol Cell 16:2759–2771

    Article  CAS  PubMed  Google Scholar 

  111. Harris E, Wang N, Wu W, Weatherford A, De Lozanne A, Cardelli J (2002) Dictyostelium LvsB mutants model the lysosomal defects associated with Chediak-Higashi syndrome. Mol Biol Cell 13:656–669

    Article  CAS  PubMed  Google Scholar 

  112. Cornillon S, Dubois A, Bruckert F, Lefkir Y, Marchetti A, Benghezal M, De Lozanne A, Letourneur F, Cosson P (2002) Two members of the beige/CHS (BEACH) family are involved at different stages in the organization of the endocytic pathway in Dictyostelium. J Cell Sci 115:737–744

    CAS  PubMed  Google Scholar 

  113. Chubb JR, Wilkins A, Thomas GM, Insall RH (2000) The Dictyostelium RasS protein is required for macropinocytosis, phagocytosis and the control of cell movement. J Cell Sci 113:709–719

    CAS  PubMed  Google Scholar 

  114. Escalante R (2011) Dictyostelium as a model for human disease. Semin Cell Dev Biol 22:69

    Article  PubMed  Google Scholar 

  115. Bozzaro S, Eichinger L (2011) The professional phagocyte Dictyostelium discoideum as a model host for bacterial pathogens. Curr Drug Targets 12:942–954

    Article  CAS  PubMed  Google Scholar 

  116. Wong CC, Traynor D, Basse N, Kay RR, Warren AJ (2011) Defective ribosome assembly in Shwachman-Diamond syndrome. Blood 118:4305–4312

    Article  CAS  PubMed  Google Scholar 

  117. Senger B, Lafontaine D, Graindorge J, Gadal O, Camasses A, Sanni A, Garnier JM, Breitenbach M, Hurt E, Fasiolo F (2001) The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis. Mol Cell 8:1363–1373

    Article  CAS  PubMed  Google Scholar 

  118. Balbo A, Bozzaro S (2006) Cloning of Dictyostelium eIF6 (p27(BBP)) and mapping its nucle(ol)ar localization subdomains. Eur J Cell Biol 85:1069–1078

    Article  CAS  PubMed  Google Scholar 

  119. Imarisio S, Carmichael J, Korolchuk V, Chen CW, Saiki S, Rose C, Krishna G, Davies JE, Ttofi E, Underwood BR, Rubinsztein DC (2008) Huntington’s disease: from pathology and genetics to potential therapies. Biochem J 412:191–209

    Article  CAS  PubMed  Google Scholar 

  120. Wang Y, Steimle PA, Ren Y, Ross CA, Robinson DN, Egelhoff TT, Sesaki H, Iijima M (2011) Dictyostelium huntingtin controls chemotaxis and cytokinesis through the regulation of myosin II phosphorylation. Mol Biol Cell 22:2270–2281

    Article  CAS  PubMed  Google Scholar 

  121. Myre MA, Lumsden AL, Thompson MN, Wasco W, Macdonald ME, Gusella JF (2011) Deficiency of huntingtin has pleiotropic effects in the social amoeba Dictyostelium discoideum. PLoS Genet 7:e1002052

    Article  CAS  PubMed  Google Scholar 

  122. Lima W, Leuba F, Soldati T, Cosson P (2012) Mucolipin controls lysosome exocytosis in Dictyostelium. J Cell Sci 125(Pt 9):2315–2322

    Article  CAS  PubMed  Google Scholar 

  123. Francione LM, Annesley SJ, Carilla-Latorre S, Escalante R, Fisher PR (2011) The Dictyostelium model for mitochondrial disease. Semin Cell Dev Biol 22:120–130

    Article  CAS  PubMed  Google Scholar 

  124. Meyer I, Kuhnert O, Gräf R (2011) Functional analyses of lissencephaly-related proteins in Dictyostelium. Semin Cell Dev Biol 22:89–96

    Article  CAS  PubMed  Google Scholar 

  125. Journet A, Klein G, Brugiere S, Vandenbrouck Y, Chapel A, Kieffer S, Bruley C, Masselon C, Aubry L (2012) Investigating the macropinocytic proteome of Dictyostelium amoebae by high-resolution mass spectrometry. Proteomics 12:241–245

    Article  CAS  PubMed  Google Scholar 

  126. Cardelli J (2001) Phagocytosis and macropinocytosis in Dictyostelium: phosphoinositide-based processes, biochemically distinct. Traffic 2:311–320

    Article  CAS  PubMed  Google Scholar 

  127. Charette SJ, Mercanti V, Letourneur F, Bennett N, Cosson P (2006) A role for adaptor protein-3 complex in the organization of the endocytic pathway in Dictyostelium. Traffic 7:1528–1538

    Article  CAS  PubMed  Google Scholar 

  128. Kypri E, Schmauch C, Maniak M, De Lozanne A (2007) The BEACH protein lvsB is localized on lysosomes and postlysosomes and limits their fusion with early endosomes. Traffic 8:774–783

    Article  CAS  PubMed  Google Scholar 

  129. Charette SJ, Cosson P (2007) A LYST/beige homolog is involved in biogenesis of Dictyostelium secretory lysosomes. J Cell Sci 120:2338–2343

    Article  CAS  PubMed  Google Scholar 

  130. Maniak M (2011) Dictyostelium as a model for human lysosomal and trafficking diseases. Semin Cell Dev Biol 22:114–119

    Article  CAS  PubMed  Google Scholar 

  131. Cox T, Cachon-Gonzales M (2012) The cellular pathology of lysosomal diseases. J Pathol 226:241–254

    Article  CAS  PubMed  Google Scholar 

  132. Body J (2006) Bisphopshonates for malignancy-related bone disease: current status, future developments. Support Care Cancer 14:408–418

    Article  PubMed  Google Scholar 

  133. Rogers MJ, Brown RJ, Hodkin V, Blackburn GM, Russell RGG, Watts DJ (1996) Bisphosphonates are incorporated into adenine nucleotides by human aminoacyl-tRNA synthetase enzymes. Biochem Biophys Res Commun 224:863–869

    Article  CAS  PubMed  Google Scholar 

  134. Grove JE, Brown RJ, Watts DJ (2000) The intracellular target for the antiresorptive aminobisphosphonate drugs in Dictyostelium discoideum is the enzyme farnesyl diphosphate synthase. J Bone Miner Res 15:971–981

    Article  CAS  PubMed  Google Scholar 

  135. Sugden CJ, Roper JR, Williams JG (2005) Engineered gene over-expression as a method of drug target identification. Biochem Biophys Res Commun 334:555–560

    Article  CAS  PubMed  Google Scholar 

  136. Alexander S, Alexander H (2011) Lead genetic studies in Dictyostelium discoideum and translational studies in human cells demonstrate that sphingolipids are key regulators of sensitivity to cisplatin and other anticancer drugs. Semin Cell Dev Biol 22:97–104

    Article  CAS  PubMed  Google Scholar 

  137. Ludtmann MH, Boeckeler K, Williams RS (2011) Molecular pharmacology in a simple model system: implicating MAP kinase and phosphoinositide signalling in bipolar disorder. Semin Cell Dev Biol 22:105–113

    Article  CAS  PubMed  Google Scholar 

  138. Lima WC, Lelong E, Cosson P (2011) What can Dictyostelium bring to the study of Pseudomonas infections? Semin Cell Dev Biol 22:77–81

    Article  CAS  PubMed  Google Scholar 

  139. Clarke M (2010) Recent insights into host-pathogen interactions from Dictyostelium. Cell Microbiol 12:283–291

    Article  CAS  PubMed  Google Scholar 

  140. Hasselbring BM, Patel MK, Schell MA (2011) Dictyostelium discoideum as a model system for identification of Burkholderia pseudomallei virulence factors. Infect Immun 79:2079–2088

    Article  CAS  PubMed  Google Scholar 

  141. Greub G, Raoult D (2004) Microorganisms resistant to free-living amoebae. Clin Microbiol Rev 17:413–433

    Article  PubMed  Google Scholar 

  142. Lu H, Clarke M (2005) Dynamic properties of Legionella-containing phagosomes in Dictyostelium amoebae. Cell Microbiol 7:995–1007

    Article  CAS  PubMed  Google Scholar 

  143. Ragaz C, Pietsch H, Urwyler S, Tiaden A, Weber SS, Hilbi H (2008) The Legionella pneumophila phosphatidylinositol-4 phosphate-binding type IV substrate SidC recruits endoplasmic reticulum vesicles to a replication-permissive vacuole. Cell Microbiol 10:2416–2433

    Article  CAS  PubMed  Google Scholar 

  144. Isberg RR, O’Connor TJ, Heidtman M (2009) The Legionella pneumophila replication vacuole: making a cosy niche inside host cells. Nat Rev Microbiol 7:12–24

    Article  CAS  Google Scholar 

  145. Peracino B, Balest A, Bozzaro S (2010) Phosphoinositides differentially regulate bacterial uptake and Nramp1-induced resistance to Legionella infection in Dictyostelium. J Cell Sci 123:4039–4051

    Article  CAS  PubMed  Google Scholar 

  146. Fajardo M, Schleicher M, Noegel A, Bozzaro S, Killinger S, Heuner K, Hacker J, Steinert M (2004) Calnexin, calreticulin and cytoskeleton-associated proteins modulate uptake and growth of Legionella pneumophila in Dictyostelium discoideum. Microbiology 150:2825–2835

    Article  CAS  PubMed  Google Scholar 

  147. Hagedorn M, Soldati T (2007) Flotillin and RacH modulate the intracellular immunity of Dictyostelium to Mycobacterium marinum infection. Cell Microbiol 9:2716–2733

    Article  CAS  PubMed  Google Scholar 

  148. Hagedorn M, Rohde KH, Russell DG, Soldati T (2009) Infection by tubercular mycobacteria is spread by nonlytic ejection from their amoeba hosts. Science 323:1729–1733

    Article  CAS  PubMed  Google Scholar 

  149. Steinert M (2011) Pathogen-host interactions in Dictyostelium, Legionella, Mycobacterium and other pathogens. Semin Cell Dev Biol 22:70–76

    Article  CAS  PubMed  Google Scholar 

  150. Li Z, Dugan AS, Bloomfield G, Skelton J, Ivens A, Losick V, Isberg RR (2009) The amoebal MAP kinase response to Legionella pneumophila is regulated by DupA. Cell Host Microbe 6:253–267

    Article  CAS  PubMed  Google Scholar 

  151. Farbrother P, Wagner C, Na JB, Tunggal B, Morio T, Urushihara H, Tanaka Y, Schleicher M, Steinert M, Eichinger L (2006) Dictyostelium transcriptional host cell response upon infection with Legionella. Cell Microbiol 8:438–456

    Article  CAS  PubMed  Google Scholar 

  152. Sillo A, Matthias J, Konertz R, Bozzaro S, Eichinger L (2011) Salmonella typhimurium is pathogenic for Dictyostelium cells and subverts the starvation response. Cell Microbiol 13:1793–1811

    Article  CAS  PubMed  Google Scholar 

  153. Shevchuk O, Batzilla C, Hagele S, Kusch H, Engelmann S, Hecker M, Haas A, Heuner K, Glöckner G, Steinert M (2009) Proteomic analysis of Legionella-containing phagosomes isolated from Dictyostelium. Int J Med Microbiol 299:489–508

    Article  CAS  PubMed  Google Scholar 

  154. Urwyler S, Nyfeler Y, Ragaz C, Lee H, Mueller LN, Aebersold R, Hilbi H (2009) Proteome analysis of Legionella vacuoles purified by magnetic immunoseparation reveals secretory and endosomal GTPases. Traffic 10:76–87

    Article  CAS  PubMed  Google Scholar 

  155. Miyata ST, Kitaoka M, Brooks TM, McAuley SB, Pukatzki S (2011) Vibrio cholerae requires the type VI secretion system virulence factor VasX to kill Dictyostelium discoideum. Infect Immun 79:2941–2949

    Article  CAS  PubMed  Google Scholar 

  156. Zheng J, Ho B, Mekalanos JJ (2011) Genetic analysis of anti-amoebae and anti-bacterial activities of the type VI secretion system in Vibrio cholerae. PLoS One 6:e23876

    Article  CAS  PubMed  Google Scholar 

  157. Hilbi H, Weber S, Finsel I (2011) Anchors for effectors: subversion of phosphoinositide lipids by Legionella. Front Microbiol 2:91

    Article  CAS  PubMed  Google Scholar 

  158. Aubert DF, Flannagan RS, Valvano MA (2008) A novel sensor kinase-response regulator hybrid controls biofilm formation and type VI secretion system activity in Burkholderia cenocepacia. Infect Immun 76:1979–1991

    Article  CAS  PubMed  Google Scholar 

  159. Sun SX, Walcott S, Wolgemuth CW (2010) Cytoskeletal cross-linking and bundling in motor-independent contraction. Curr Biol 20:R649–R654

    Article  CAS  PubMed  Google Scholar 

  160. King JS, Insall RH (2009) Chemotaxis: finding the way forward with Dictyostelium. Trends Cell Biol 19:523–530

    Article  CAS  PubMed  Google Scholar 

  161. Veltman DM, Insall RH (2010) WASP family proteins: their evolution and its physiological implications. Mol Biol Cell 21:2880–2893

    Article  CAS  PubMed  Google Scholar 

  162. Iglesias P (2012) Chemoattractant signalling in Dictyostelium: adaptation and amplification. Sci Signal 5:pe8

    Article  PubMed  Google Scholar 

  163. Afonso PV, Parent CA (2011) PI3K and chemotaxis: a priming issue? Sci Signal 4:pe22

    Article  PubMed  CAS  Google Scholar 

  164. Liu R, Linardopoulou EV, Osborn GE, Parkhurst SM (2010) Formins in ­development: orchestrating body plan origami. Biochim Biophys Acta 1803:207–225

    Article  CAS  PubMed  Google Scholar 

  165. Cosson P, Soldati T (2008) Eat, kill or die: when amoeba meets bacteria. Curr Opin Microbiol 11:271–276

    Article  CAS  PubMed  Google Scholar 

  166. Kourtis N, Tavernarakis N (2009) Autophagy and cell death in model organisms. Cell Death Differ 16:21–30

    Article  CAS  PubMed  Google Scholar 

  167. Weijer CJ (2009) Collective cell migration in development. J Cell Sci 122:3215–3223

    Article  CAS  PubMed  Google Scholar 

  168. Williams JG (2010) Dictyostelium finds new roles to model. Genetics 185:717–726

    Article  CAS  PubMed  Google Scholar 

  169. Jang W, Gomer RH (2011) Initial cell type choice in Dictyostelium. Eukaryot Cell 10:150–155

    Article  CAS  PubMed  Google Scholar 

  170. Gomer RH, Jang W, Brazill D (2011) Cell density sensing and size determination. Dev Growth Differ 53:482–494

    Article  CAS  PubMed  Google Scholar 

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Bozzaro, S. (2013). The Model Organism Dictyostelium discoideum . In: Eichinger, L., Rivero, F. (eds) Dictyostelium discoideum Protocols. Methods in Molecular Biology, vol 983. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-302-2_2

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