Abstract
The development of array comparative genomic hybridization (aCGH) techniques has allowed to characterize more precisely several human neoplasms with the aim of providing prognostic markers and targets for directed therapeutic intervention. Recently, several studies applying aCGH technique have been reported in which an exhaustive genetic characterization of mycosis fungoides (MF) and Sézary syndrome (SS) has been performed. Regarding MF, a genomic profile characterized by the gains of 7q, 17q, and 8q and losses in 9p, 13q, 17p, and 10q has been described. In SS, the most common abnormalities are gains in 8q and 17q and losses at 17p and 10q. One of the main contributions of the aCGH studies in MF and SS has been the description of genetic markers associated with a poor prognosis. In MF, three specific chromosomal regions, 9p21.3 (CDKN2A, CDKN2B, and MTAP), 8q24.21 (MYC), and 10q26qter (MGMT and EBF3) have been defined as prognostic markers exhibiting a significant correlation with overall survival (P = 0.042, P = 0.017, and P = 0.022, respectively). Moreover, two MF genomic subgroups have been described, distinguishing a stable group (0–5 DNA aberrations) and an unstable group (>5 DNA aberrations), showing that the genomic unstable group had a shorter overall survival (P = 0.05).
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References
Criscione VD, Weinstock MA (2007) Incidence of cutaneous T-cell lymphoma in the United States, 1973–2002. Arch Dermatol 1437:854–859
Willemze R, Jaffe ES, Burg G et al (2005) WHO-EORTC classification for cutaneous lymphomas. Blood 10510:3768–3785
Swerdlow SH, Campo E, Harris NL, Jaffe ES, Pileri SA, Stein H et al eds (2008) World Health Organization classification of tumours of haematopoietic and lymphoid tissues. IARC Press: Lyon
Kuzel TM, Roenigk HH Jr, Rosen ST (1991) Mycosis fungoides and the Sézary syndrome: a review of pathogenesis, diagnosis, and therapy. J Clin Oncol 97:1298–1313
Diamandidou E, Cohen PR, Kurzrock R (1996) Mycosis fungoides and Sézary syndrome. Blood 887:2385–2409
Harwix S, Gunzl HJ, Blaschke V, Zachmann K, Neumann C (2001) Inability to culture the dominant T-cell clone from the skin of primary cutaneous T-cell lymphoma as proven by TCR gamma-chain gene sequencing. Arch Dermatol Res 2933:139–146
Karenko L, Hyytinen E, Sarna S, Ranki A (1997) Chromosomal abnormalities in cutaneous T-cell lymphoma and in its premalignant conditions as detected by G-banding and interphase cytogenetic methods. J Invest Dermatol 1081:22–29
Batista DA, Vonderheid EC, Hawkins A et al (2006) Multicolor fluorescence in situ hybridization (SKY) in mycosis fungoides and Sézary syndrome: search for recurrent chromosome abnormalities. Genes Chromosomes Cancer 454:383–391
Padilla-Nash HM, Wu K, Just H, Ried T, Thestrup-Pedersen K (2007) Spectral karyotyping demonstrates genetically unstable skin-homing T lymphocytes in cutaneous T-cell lymphoma. Exp Dermatol 162:98–103
Karenko L, Kahkonen M, Hyytinen ER, Lindlof M, Ranki A (1999) Notable losses at specific regions of chromosomes 10q and 13q in the Sézary syndrome detected by comparative genomic hybridization. J Invest Dermatol 1123:392–395
Mao X, Lillington D, Scarisbrick JJ et al (2002) Molecular cytogenetic analysis of cutaneous T-cell lymphomas: identification of common genetic alterations in Sézary syndrome and mycosis fungoides. Br J Dermatol 1473:464–475
Fischer TC, Gellrich S, Muche JM et al (2004) Genomic aberrations and survival in cutaneous T cell lymphomas. J Invest Dermatol 1223:579–586
Prochazkova M, Chevret E, Mainhaguiet G et al (2007) Common chromosomal abnormalities in mycosis fungoides transformation. Genes Chromosomes Cancer 469:828–838
Sole F, Woessner S, Vallespi T et al (1995) Cytogenetic abnormalities in seven patients with the Sézary syndrome. Sangre (Barc) 405:431–433
Thangavelu M, Finn WG, Yelavarthi KK et al (1997) Recurring structural chromosome abnormalities in peripheral blood lymphocytes of patients with mycosis fungoides/Sézary syndrome. Blood 899:3371–3377
Mao X, Lillington DM, Czepulkowski B, Russell-Jones R, Young BD, Whittaker S (2003) Molecular cytogenetic characterization of Sézary syndrome. Genes Chromosomes Cancer 363:250–260
Espinet B, Salido M, Pujol RM et al (2004) Genetic characterization of Sézary’s syndrome by conventional cytogenetics and cross-species color banding fluorescent in situ hybridization. Haematologica 892:165–173
Barba G, Matteucci C, Girolomoni G et al (2008) Comparative genomic hybridization identifies 17q11.2 approximately q12 duplication as an early event in cutaneous T-cell lymphomas. Cancer Genet Cytogenet 1841:48–51
Karenko L, Sarna S, Kahkonen M, Ranki A (2003) Chromosomal abnormalities in relation to clinical disease in patients with cutaneous T-cell lymphoma: a 5-year follow-up study. Br J Dermatol 1481:55–64
van Doorn R, van Kester MS, Dijkman R et al (2009) Oncogenomic analysis of mycosis fungoides reveals major differences with Sézary syndrome. Blood 1131:127–136
Salgado R, Servitje O, Gallardo F et al (2010) Oligonucleotide array-CGH identifies genomic subgroups and prognostic markers for tumor stage mycosis fungoides. J Invest Dermatol 1304:1126–1135
Laharanne E, Oumouhou N, Bonnet F et al (2010) Genome-wide analysis of cutaneous T-cell lymphomas identifies three clinically relevant classes. J Invest Dermatol 1306:1707–1718
Vermeer MH, van Doorn R, Dijkman R et al (2008) Novel and highly recurrent chromosomal alterations in Sézary syndrome. Cancer Res 688:2689–2698
Caprini E, Cristofoletti C, Arcelli D et al (2009) Identification of key regions and genes important in the pathogenesis of Sézary syndrome by combining genomic and expression microarrays. Cancer Res 6921:8438–8446
Lengauer C, Kinzler KW, Vogelstein B (1998) Genetic instabilities in human cancers. Nature 3966712:643–649
Blaveri E, Brewer JL, Roydasgupta R et al (2005) Bladder cancer stage and outcome by array-based comparative genomic hybridization. Clin Cancer Res 1119(Pt 1):7012–7022
Fridlyand J, Snijders AM, Ylstra B et al (2006) Breast tumor copy number aberration phenotypes and genomic instability. BMC Cancer 6:96
Ferreira BI, Alonso J, Carrillo J et al (2008) Array CGH and gene-expression profiling reveals distinct genomic instability patterns associated with DNA repair and cell-cycle checkpoint pathways in Ewing’s sarcoma. Oncogene 2714:2084–2090
Ferreira BI, Garcia JF, Suela J et al (2008) Comparative genome profiling across subtypes of low-grade B-cell lymphoma identifies type-specific and common aberrations that target genes with a role in B-cell neoplasia. Haematologica 935:670–679
Wlodarska I, Martin-Garcia N, Achten R et al (2002) Fluorescence in situ hybridization study of chromosome 7 aberrations in hepatosplenic T-cell lymphoma: Isochromosome 7q as a common abnormality accumulating in forms with features of cytologic progression. Genes Chromosomes Cancer 333:243–251
Tamaska J, Adam E, Kozma A et al (2006) Hepatosplenic gamma delta T-cell lymphoma with ring chromosome 7, an isochromosome 7q equivalent clonal chromosomal aberration. Virchows Arch 4494:479–483
Feldman AL, Law M, Grogg KL et al (2008) Incidence of TCR and TCL1 gene translocations and isochromosome 7q in peripheral T-cell lymphomas using fluorescence in situ hybridization. Am J Clin Pathol 1302:178–185
Laharanne E, Chevret E, Idrissi Y et al (2010) CDKN2A-CDKN2B deletion defines an aggressive subset of cutaneous T-cell lymphoma. Mod Pathol 234:547–558
Navas IC, Algara P, Mateo M et al (2002) p16(INK4a) is selectively silenced in the tumoral progression of mycosis fungoides. Lab Invest 822:123–132
Navas IC, Ortiz-Romero PL, Villuendas R et al (2000) p16(INK4a) gene alterations are frequent in lesions of mycosis fungoides. Am J Pathol 1565:1565–1572
Nobori T, Takabayashi K, Tran P et al (1996) Genomic cloning of methylthioadenosine phosphorylase: a purine metabolic enzyme deficient in multiple different cancers. Proc Natl Acad Sci U S A 9312:6203–6208
Dreyling MH, Roulston D, Bohlander SK, Vardiman J, Olopade OI (1998) Codeletion of CDKN2 and MTAP genes in a subset of non-Hodgkin’s lymphoma may be associated with histologic transformation from low-grade to diffuse large-cell lymphoma. Genes Chromosomes Cancer 221:72–78
Christopher SA, Diegelman P, Porter CW, Kruger WD (2002) Methylthioadenosine phosphorylase, a gene frequently codeleted with p16(cdkN2a/ARF), acts as a tumor suppressor in a breast cancer cell line. Cancer Res 6222:6639–6644
Subhi AL, Tang B, Balsara BR et al (2004) Loss of methylthioadenosine phosphorylase and elevated ornithine decarboxylase is common in pancreatic cancer. Clin Cancer Res 1021:7290–7296
Marce S, Balague O, Colomo L et al (2006) Lack of methylthioadenosine phosphorylase expression in mantle cell lymphoma is associated with shorter survival: Implications for a potential targeted therapy. Clin Cancer Res 1212:3754–3761
Mirebeau D, Acquaviva C, Suciu S et al (2006) The prognostic significance of CDKN2A, CDKN2B and MTAP inactivation in B-lineage acute lymphoblastic leukemia of childhood. Results of the EORTC studies 58881 and 58951. Haematologica 917:881–885
Worsham MJ, Chen KM, Tiwari N et al (2006) Fine-mapping loss of gene architecture at the CDKN2B (p15INK4b), CDKN2A (p14ARF, p16INK4a), and MTAP genes in head and neck squamous cell carcinoma. Arch Otolaryngol Head Neck Surg 1324:409–415
Kadariya Y, Yin B, Tang B et al (2009) Mice heterozygous for germ-line mutations in methylthioadenosine phosphorylase (MTAP) die prematurely of T-cell lymphoma. Cancer Res 6914:5961–5969
Meyer N, Kim SS, Penn LZ (2006) The Oscar-worthy role of myc in apoptosis. Semin Cancer Biol 164:275–287
Vita M, Henriksson M (2006) The myc oncoprotein as a therapeutic target for human cancer. Semin Cancer Biol 164:318–330
Dalla-Favera R, Bregni M, Erikson J, Patterson D, Gallo RC, Croce CM (1982) Human c-myc oncogene is located on the region of chromosome 8 that is translocated in Burkitt lymphoma cells. Proc Natl Acad Sci USA 7924:7824–7827
Klapproth K, Wirth T (2010) Advances in the understanding of MYC-induced lymphomagenesis. Br J Haematol 1494:484–497
Dezfouli S, Bakke A, Huang J, Wynshaw-Boris A, Hurlin PJ (2006) Inflammatory disease and lymphomagenesis caused by deletion of the myc antagonist mnt in T cells. Mol Cell Biol 266:2080–2092
Limon J, Nedoszytko B, Brozek I et al (1995) Chromosome aberrations, spontaneous SCE, and growth kinetics in PHA-stimulated lymphocytes of five cases with Sézary syndrome. Cancer Genet Cytogenet 831:75–81
Scarisbrick JJ, Woolford AJ, Russell-Jones R, Whittaker SJ (2000) Loss of heterozygosity on 10q and microsatellite instability in advanced stages of primary cutaneous T-cell lymphoma and possible association with homozygous deletion of PTEN. Blood 959:2937–2942
Scarisbrick JJ, Woolford AJ, Russell-Jones R, Whittaker SJ (2001) Allelotyping in mycosis fungoides and Sézary syndrome: common regions of allelic loss identified on 9p, 10q, and 17p. J Invest Dermatol 1173:663–670
Wain EM, Mitchell TJ, Russell-Jones R, Whittaker SJ (2005) Fine mapping of chromosome 10q deletions in mycosis fungoides and Sézary syndrome: identification of two discrete regions of deletion at 10q23.33-24.1 and 10q24.33-25.1. Genes Chromosomes Cancer 422:184–192
Gallardo F, Esteller M, Pujol RM, Costa C, Estrach T, Servitje O (2004) Methylation status of the p15, p16 and MGMT promoter genes in primary cutaneous T-cell lymphomas. Haematologica 8911:1401–1403
van Doorn R, Zoutman WH, Dijkman R et al (2005) Epigenetic profiling of cutaneous T-cell lymphoma: promoter hypermethylation of multiple tumor suppressor genes including BCL7a, PTPRG, and p73. J Clin Oncol 2317:3886–3896
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Espinet, B., Salgado, R. (2013). Mycosis Fungoides and Sézary Syndrome. In: Banerjee, D., Shah, S. (eds) Array Comparative Genomic Hybridization. Methods in Molecular Biology, vol 973. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-281-0_11
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DOI: https://doi.org/10.1007/978-1-62703-281-0_11
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