Abstract
Curli are proteinaceous fibrous structures produced on the surface of many gram-negative bacteria. As a major constituent of the extracellular matrix, curli mediate interactions between the bacteria and its environment, and as such, curli play a critical role in biofilm formation. Curli fibers share biophysical properties with a growing number of remarkably stable and ordered protein aggregates called amyloid. Here we describe experimental methods to study the biogenesis and assembly of curli by exploiting their amyloid properties. We also present methods to analyze curli-mediated biofilm formation. These approaches are straightforward and can easily be adapted to study other bacterially produced amyloids.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Zogaj X, Bokranz W, Nimtz M, Romling U (2003) Production of cellulose and curli fimbriae by members of the family Enterobacteriaceae isolated from the human gastrointestinal tract. Infect Immun 71(7):4151–4158
Prigent-Combaret C, Prensier G, Le Thi TT, Vidal O, Lejeune P, Dorel C (2000) Developmental pathway for biofilm formation in curli-producing Escherichia coli strains: role of flagella, curli and colanic acid. Environ Microbiol 2(4):450–464
Tükel CRM, Humphries AD, Wilson RP, Andrews-Polymenis HL, Gull T, Figueiredo JF, Wong MH, Michelsen KS, Akçelik M, Adams LG, Bäumler AJ (2005) CsgA is a pathogen-associated molecular pattern of Salmonella enterica serotype Typhimurium that is recognized by Toll-like receptor 2. Mol Microbiol 58(1):289–304
Tukel C, Wilson RP, Nishimori JH, Pezeshki M, Chromy BA, Baumler AJ (2009) Responses to amyloids of microbial and host origin are mediated through Toll-Like receptor 2. Cell Host Microbe 6(1):45–53
Gophna U, Barlev M, Seijffers R, Oelschlager TA, Hacker J, Ron EZ (2001) Curli fibers mediate internalization of Escherichia coli by eukaryotic cells. Infect Immun 69(4):2659–2665
Johansson C, Nilsson T, Olsen A, Wick MJ (2001) The influence of curli, a MHC-I-binding bacterial surface structure, on macrophage-T cell interactions. FEMS Immunol Med Microbiol 30(1):21–29
Olsen A, Jonsson A, Normark S (1989) Fibronectin binding mediated by a novel class of surface organelles on Escherichia coli. Nature 338(6217):652–655
Kikuchi T, Mizunoe Y, Takade A, Naito S, Yoshida S (2005) Curli fibers are required for development of biofilm architecture in Escherichia coli K-12 and enhance bacterial adherence to human uroepithelial cells. Microbiol Immunol 49(9):875–884
Uhlich GA, Cooke PH, Solomon EB (2006) Analyses of the red-dry-rough phenotype of an Escherichia coli O157: H7 strain and its role in biofilm formation and resistance to antibacterial agents. Appl Environ Microbiol 72(4):2564–2572
Austin JW, Sanders G, Kay WW, Collinson SK (1998) Thin aggregative fimbriae enhance Salmonella enteritidis biofilm formation. FEMS Microbiol Lett 162(2):295–301
Weiss-Muszkat M, Shakh D, Zhou Y, Pinto R, Belausov E, Chapman MR, Sela S (2010) Biofilm formation by and multicellular behavior of Escherichia coli O55:H7, an atypical enteropathogenic strain. Appl Environ Microbiol 76(5):1545–1554
Cegelski L, Pinkner JS, Hammer ND, Cusumano CK, Hung CS, Chorell E, Aberg V, Walker JN, Seed PC, Almqvist F, Chapman MR, Hultgren SJ (2009) Small-molecule inhibitors target Escherichia coli amyloid biogenesis and biofilm formation. Nat Chem Biol 5(12):913–919
Barnhart MM, Chapman MR (2006) Curli biogenesis and function. Annu Rev Microbiol 60:131–147
Hammar M, Arnqvist A, Bian Z, Olsen A, Normark S (1995) Expression of two csg operons is required for production of fibronectin- and Congo red-binding curli polymers in Escherichia coli K-12. Mol Microbiol 18(4):661–670
Gerstel U, Romling U (2003) The csgD promoter, a control unit for biofilm formation in Salmonella typhimurium. Res Microbiol 154(10):659–667
Collinson SK, Emody L, Muller KH, Trust TJ, Kay WW (1991) Purification and characterization of thin, aggregative fimbriae from Salmonella enteritidis. J Bacteriol 173(15):4773–4781
Hammar MBZ, Normark S (1996) Nucleator-dependent intercellular assembly of adhesive curli organelles in Escherichia coli. Proc Natl Acad Sci U S A 93:6562–6566
Hammer ND, Schmidt JC, Chapman MR (2007) The curli nucleator protein, CsgB, contains an amyloidogenic domain that directs CsgA polymerization. Proc Natl Acad Sci U S A 104(30):12494–12499
Robinson LSAE, Hultgren SJ, Chapman MR (2006) Secretion of curli fibre subunits is mediated by the outer membrane-localized CsgG protein. Mol Microbiol 59(3):870–881
Nenninger AA, Robinson LS, Hammer ND, Epstein EA, Badtke MP, Hultgren SJ, Chapman MR (2011) CsgE is a curli secretion specificity factor that prevents amyloid fibre aggregation. Mol Microbiol 81(2):486–499
Nenninger AA, Robinson LS, Hultgren SJ (2009) Localized and efficient curli nucleation requires the chaperone-like amyloid assembly protein CsgF. Proc Natl Acad Sci U S A 106(3):900–905
Taylor JD, Zhou YZ, Salgado PS, Patwardhan A, McGuffie M, Pape T, Grabe G, Ashman E, Constable SC, Simpson PJ, Lee WC, Cota E, Chapman MR, Matthews SJ (2011) Atomic resolution insights into curli fiber biogenesis. Structure 19(9):1307–1316
Sunde M, Blake C (1997) The structure of amyloid fibrils by electron microscopy and X-ray diffraction. Adv Protein Chem 50:123–159
Sunde M, Serpell LC, Bartlam M, Fraser PE, Pepys MB, Blake CCF (1997) Common core structure of amyloid fibrils by synchrotron X-ray diffraction. J Mol Biol 273(3):729–739
Nordstedt C, Naslund J, Tjernberg LO, Karlstrom AR, Thyberg J, Terenius L (1994) The alzheimer a-beta-peptide develops protease resistance in association with its polymerization into fibrils. J Biol Chem 269(49):30773–30776
Glenner GG, Wong CW (1984) Alzheimer’s disease: initial report of the purification and characterization of a novel cerebrovascular amyloid protein. Biochem Biophys Res Commun 120(3):885–890
Prusiner SB (1996) Molecular biology and pathogenesis of prion diseases. Trends Biochem Sci 21(12):482–487
Blanco LP, Evans ML, Smith DR, Badtke MP, Chapman MR (2012) Diversity, biogenesis and function of microbial amyloids. Trends Microbiol 20:66–73
Wang X, Chapman MR (2008) Curli provide the template for understanding controlled amyloid propagation. Prion 2(2):57–60
Badtke MP, Hammer ND, Chapman MR (2009) Functional amyloids signal their arrival. Sci Signal 2(80):pe43
Fowler DM, Koulov AV, Balch WE, Kelly JW (2007) Functional amyloid—from bacteria to humans. Trends Biochem Sci 32(5):217–224
Elliot MA, Karoonuthaisiri N, Huang J, Bibb MJ, Cohen SN, Kao CM, Buttner MJ (2003) The chaplins: a family of hydrophobic cell-surface proteins involved in aerial mycelium formation in Streptomyces coelicolor. Genes Dev 17(14):1727–1740
Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE. Functional amyloid in Pseudomonas. Mol Microbiol. 2010 Jun 21. [Epub ahead of print]. PMID: 20572935
Romero D, Aguilar C, Losick R, Kolter R (2010) Amyloid fibers provide structural integrity to Bacillus subtilis biofilms. Proc Natl Acad Sci U S A 107(5):2230–2234
Chapman MR, Robinson LS, Pinkner JS, Roth R, Heuser J, Hammar M, Normark S, Hultgren SJ (2002) Role of Escherichia coli curli operons in directing amyloid fiber formation. Science 295(5556):851–855
King CYTP, Gross H, Gebert R, Aebi M, Wüthrich K (1997) Prion-inducing domain 2–114 of yeast Sup35 protein transforms in vitro into amyloid-like filaments. Proc Natl Acad Sci U S A 94(13):6618–6622
Dos Reis SC-SB, Forge V, Lascu I, Bégueret J, Saupe SJ (2002) The HET-s prion protein of the filamentous fungus Podospora anserina aggregates in vitro into amyloid-like fibrils. J Biol Chem 227(8):5703–5706
Fowler DM, Koulov AV, Alory-Jost C, Marks MS, Balch WE, Kelly JW (2006) Functional amyloid formation within mammalian tissue. PLoS Biol 4(1):100–107
Maji SKPM, Perrin MH, Sawaya MR, Jessberger S, Vadodaria K, Rissman RA, Singru PS, Nilsson KP, Simon R, Schubert D, Eisenberg D, Rivier J, Sawchenko P, Vale W, Riek R (2009) Functional amyloids as natural storage of peptide hormones in pituitary secretory granules. Science 325(5938):328–332
Wang X, Smith DR, Jones JW, Chapman MR (2007) In vitro polymerization of a functional Escherichia coli amyloid protein. J Biol Chem 282(6):3713–3719
Wang X, Zhou Y, Ren JJ, Hammer ND, Chapman MR (2010) Gatekeeper residues in the major curlin subunit modulate bacterial amyloid fiber biogenesis. Proc Natl Acad Sci U S A 107(1):163–168
Wang X, Chapman MR (2008) Sequence determinants of bacterial amyloid formation. J Mol Biol 380(3):570–580
Hammer ND, McGuffie BA, Zhou Y, Badtke MP, Reinke AA, Brännström K, Gestwicki JE, Olofsson A, Almqvist F, Chapman MR. The C-Terminal Repeating Units of CsgB Direct Bacterial Functional Amyloid Nucleation. J Mol Biol. 2012 Sep 21;422(3):376-89. Epub 2012 Jun 7. PMID: 22684146
Merritt JH, Kadouri DE, O’Toole GA. Growing and analyzing static biofilms. Curr Protoc Microbiol. 2005 Jul;Chapter 1:Unit 1B.1. PMID: 18770545
Werner Bokranz XW, Tschäpe H, Römling U (2005) Expression of cellulose and curli fimbriae by Escherichia coli isolated from the gastrointestinal tract. J Med Microbiol 54:1171–1182
Collinson SK, Doig PC, Doran JL, Clouthier S, Trust TJ, Kay WW (1993) Thin, aggregative fimbriae mediate binding of Salmonella enteritidis to fibronectin. J Bacteriol 175(1):12–18
Bian Z, Brauner A, Li Y, Normark S (2000) Expression of and cytokine activation by Escherichia coli curli fibers in human sepsis. J Infect Dis 181(2):602–612
Römling U (2005) Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Cell Mol Life Sci 62(11):1234–1246
O’Nuallain B, Williams AD, Westermark P, Wetzel R (2004) Seeding specificity in amyloid growth induced by heterologous fibrils. J Biol Chem 279(17):17490–17499
Wright CF, Teichmann SA, Clarke J, Dobson CM (2005) The importance of sequence diversity in the aggregation and evolution of proteins. Nature 438(7069):878–881
Evans ML, Schmidt JC, Ilbert M, Doyle SM, Quan S, Bardwell JC, Jakob U, Wickner S, Chapman MR (2011) E. coli chaperones DnaK, Hsp33 and Spy inhibit bacterial functional amyloid assembly. Prion 5(4): 323–34
Acknowledgments
We thank members of the Chapman laboratory for helpful discussions and review of this manuscript. This work was supported by the National Institutes of Health Grant AI073847.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2013 Springer Science+Business Media New York
About this protocol
Cite this protocol
Zhou, Y., Smith, D.R., Hufnagel, D.A., Chapman, M.R. (2013). Experimental Manipulation of the Microbial Functional Amyloid Called Curli. In: Delcour, A. (eds) Bacterial Cell Surfaces. Methods in Molecular Biology, vol 966. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-245-2_4
Download citation
DOI: https://doi.org/10.1007/978-1-62703-245-2_4
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-62703-244-5
Online ISBN: 978-1-62703-245-2
eBook Packages: Springer Protocols