Abstract
JAK kinases are critical mediators in development, differentiation, and homeostasis and accordingly, have become well-validated targets for drug discovery efforts. In recent years, the integration of X-ray crystallography in kinase-focused drug discovery programs has provided a powerful rationale for chemical modification by allowing a unique glimpse of a bound inhibitor to its target. Such structural information has not only led to an improved understanding of the key drivers of potency and specificity of several JAK-specific compounds but has greatly facilitated and accelerated the design of compounds with improved pharmacokinetic properties.
JAK kinases are traditionally difficult candidates to express in significant quantities, generally requiring eukaryotic expression systems, protein engineering, mutations to yield soluble, homogeneous samples suitable for crystallization studies. Here we review the key methods utilized to express, purify, and crystallize the JAK kinases and provide a detail description of the methods that we have developed to express, purify, and crystallize recombinant JAK1 and JAK2 proteins in the presence of small molecule inhibitors.
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References
Wilks AF (2008) The JAK kinases: not just another kinase drug discovery target. Semin Cell Dev Biol 19:319–328
Harpur AG, Andres AC, Ziemiecki A et al (1992) JAK2, a third member of the JAK family of protein tyrosine kinases. Oncogene 7:1347–1353
Chrencik JE, Patny A, Leung IK et al (2010) Structural and thermodynamic characterization of the TYK2 and JAK3 kinase domains in complex with CP-690550 and CMP-6. J Mol Biol 400:413–433
Tsui V, Gibbons P, Ultsch M et al (2011) A new regulatory switch in a JAK protein kinase. Proteins 79:393–401
Liu Y, Gray NS (2006) Rational design of inhibitors that bind to inactive kinase conformations. Nat Chem Biol 2:358–364
Haan C, Kroy DC, Wuller S et al (2009) An unusual insertion in Jak2 is crucial for kinase activity and differentially affects cytokine responses. J Immunol 182:2969–2977
Lucet IS, Fantino E, Styles M et al (2006) The structural basis of Janus kinase 2 inhibition by a potent and specific pan-Janus kinase inhibitor. Blood 107:176–183
Alicea-Velazquez NL, Boggon TJ (2011) The use of structural biology in Janus kinase targeted drug discovery. Curr Drug Targets 12:546–555
Ioannidis S, Lamb ML, Wang T et al (2011) Discovery of 5-Chloro-N(2)-[(1S)-1-(5-fluoropyrimidin-2-yl)ethyl]-N(4)-(5-methyl-1H-pyr azol-3-yl)pyrimidine-2,4-diamine (AZD1480) as a Novel Inhibitor of the Jak/Stat Pathway. J Med Chem 54:262–276
Korniski B, Wittwer AJ, Emmons TL et al (2010) Expression, purification, and characterization of TYK-2 kinase domain, a member of the Janus kinase family. Biochem Biophys Res Commun 396:543–548
Hall T, Emmons TL, Chrencik JE et al (2010) Expression, purification, characterization and crystallization of non- and phosphorylated states of JAK2 and JAK3 kinase domain. Protein Expr Purif 69:54–63
Boggon TJ, Li Y, Manley PW et al (2005) Crystal structure of the Jak3 kinase domain in complex with a staurosporine analog. Blood 106:996–1002
Williams NK, Bamert RS, Patel O et al (2009) Dissecting specificity in the Janus kinases: the structures of JAK-specific inhibitors complexed to the JAK1 and JAK2 protein tyrosine kinase domains. J Mol Biol 387:219–232
Wang T, Duffy JP, Wang J et al (2009) Janus kinase 2 inhibitors. Synthesis and characterization of a novel polycyclic azaindole. J Med Chem 52:7938–7941
Thompson JE, Cubbon RM, Cummings RT et al (2002) Photochemical preparation of a pyridone containing tetracycle: a Jak protein kinase inhibitor. Bioorg Med Chem Lett 12:1219–1223
Changelian PS, Flanagan ME, Ball DJ et al (2003) Prevention of organ allograft rejection by a specific Janus kinase 3 inhibitor. Science 302:875–878
Chayen NE, Saridakis E (2008) Protein crystallization: from purified protein to diffraction-quality crystal. Nat Methods 5:147–153
McPherson A (1999) Crystallization of biological macromolecules. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
Wang T, Ioannidis S, Almeida L et al (2011) In vitro and in vivo evaluation of 6-aminopyrazolyl-pyridine-3-carbonitriles as JAK2 kinase inhibitors. Bioorg Med Chem Lett 21: 2958–2961
Wang T, Ledeboer MW, Duffy JP et al (2010) A novel chemotype of kinase inhibitors: discovery of 3,4-ring fused 7-azaindoles and deazapurines as potent JAK2 inhibitors. Bioorg Med Chem Lett 20:153–156
Bergfors T (2003) Seeds to crystals. J Struct Biol 142:66–76
King LA, Hitchman R, Possee RD (2007) Recombinant baculovirus isolation. Methods Mol Biol 388:77–94
Antonysamy S, Hirst G, Park F et al (2009) Fragment-based discovery of JAK-2 inhibitors. Bioorg Med Chem Lett 19:279–282
Baffert F, Regnier CH, De Pover A et al (2010) Potent and selective inhibition of polycythemia by the quinoxaline JAK2 inhibitor NVP-BSK805. Mol Cancer Ther 9:1945–1955
Pissot-Soldermann C, Gerspacher M, Furet P et al (2010) Discovery and SAR of potent, orally available 2,8-diaryl-quinoxalines as a new class of JAK2 inhibitors. Bioorg Med Chem Lett 20:2609–2613
Harikrishnan LS, Kamau MG, Wan H et al (2011) Pyrrolo[1,2-f]triazines as JAK2 inhibitors: achieving potency and selectivity for JAK2 over JAK3. Bioorg Med Chem Lett 21: 1425–1428
Thoma G, Nuninger F, Falchetto R et al (2011) Identification of a potent Janus Kinase 3 inhibitor with high selectivity within the Janus Kinase family. J Med Chem 54: 284–288
Acknowledgments
This work was supported by the Australian Research Council and the National Health and Medical Research Council Industry Fellowship (I.L.). We thank Dr Onisha Patel and Dr Neal Williams for conducting part of the experiments described in this chapter. We thank Prof Jamie Rossjohn and Prof Andrew Wilks for supporting the research.
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Lucet, I.S., Bamert, R. (2013). Production and Crystallization of Recombinant JAK Proteins. In: Nicholson, S., Nicola, N. (eds) JAK-STAT Signalling. Methods in Molecular Biology, vol 967. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-242-1_20
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DOI: https://doi.org/10.1007/978-1-62703-242-1_20
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