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Agarose Droplet Microfluidics for Highly Parallel and Efficient Single Molecule Emulsion PCR

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Microfluidic Diagnostics

Part of the book series: Methods in Molecular Biology ((MIMB,volume 949))

Abstract

Agarose emulsion droplet microfluidic technology for single copy emulsion PCR (ePCR) is a suitable technique for the detection of single copy DNA molecules. It improves the traditional ePCR by employing agarose with low melting and low gelling temperatures, which is coupled with PCR forward primers using Schiff-base reaction. Highly uniform monodisperse nanoliter agarose droplets each containing PCR reagents and single copy template are produced with a microfabricated emulsion generator. Following PCR, the cooled droplets transform to microbeads carrying amplicons to maintain the monocolonity of each droplet, which can be further analyzed. This method allows high-throughput generation of uniform droplets and enables high PCR efficiency, making it a promising platform for many single copy genetic studies.

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References

  1. Dressman D, Yan H, Traverso G, Kinzler KW, Vogelstein B (2003) Proc Natl Acad Sci USA 100:8817

    Article  CAS  Google Scholar 

  2. Kelly BT, Baret JC, Taly V, Griffiths AD (2007) Chem Commun 1773.

    Google Scholar 

  3. Leamon JH, Link DR, Egholm M, Rothberg JM (2006) Nat Methods 3:541

    Article  CAS  Google Scholar 

  4. Li M, Chen WD, Papadopoulos N, Goodman SN, Bjerregaard NC, Laurberg S, Levin B, Juhl H, Arber N, Moinova H, Durkee K, Schmidt K, He YP, Diehl F, Velculescu VE, Zhou SB, Diaz LA, Kinzler KW, Markowitz SD, Vogelstein B (2009) Nat Biotechnol 27:858

    Article  Google Scholar 

  5. Li M, Diehl F, Dressman D, Vogelstein B, Kinzler KW (2006) Nat Methods 3:95

    Article  CAS  Google Scholar 

  6. Wheeler DA, Srinivasan M, Egholm M et al (2008) Nature 452:872

    Article  CAS  Google Scholar 

  7. Shendure J, Porreca GJ, Reppas NB, Lin XX, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005) Science 309:1728

    Article  CAS  Google Scholar 

  8. Nakano M, Komatsu J, Matsuura S, Takashima K, Katsura S, Mizuno A (2003) J Biotechnol 102:117

    Article  CAS  Google Scholar 

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Acknowledgments

This work was supported by National Scientific Foundation of China (20805038, 20620130427) and National Basic Research Program of China (2007CB935603, 2010CB732402).

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Correspondence to Chaoyong James Yang .

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© 2013 Springer Science+Business Media,LLC

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Leng, X., Yang, C.J. (2013). Agarose Droplet Microfluidics for Highly Parallel and Efficient Single Molecule Emulsion PCR. In: Jenkins, G., Mansfield, C. (eds) Microfluidic Diagnostics. Methods in Molecular Biology, vol 949. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-134-9_26

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  • DOI: https://doi.org/10.1007/978-1-62703-134-9_26

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-133-2

  • Online ISBN: 978-1-62703-134-9

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