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A Combinatorial Strategy for the Acquisition of Potent and Specific Protein Tyrosine Phosphatase Inhibitors

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Rational Drug Design

Part of the book series: Methods in Molecular Biology ((MIMB,volume 928))

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Abstract

Protein tyrosine phosphatases (PTPs), a large family of signaling enzymes, regulate many cellular processes, such as proliferation, differentiation, migration, apoptosis, and immune responses. Small molecule inhibitors against PTPs are valuable both as powerful tools to study the functions of target PTPs and as lead compounds for pharmacological development. Here, we describe a novel combinatorial library approach to target simultaneously both the active site pocket and a peripheral secondary binding site for the acquisition of potent and specific PTP inhibitors. Fluorescence tagging during combinatorial library synthesis enables fluorescence polarization-based high-throughput screening of the resulting library, leading to identification of a TC-PTP inhibitor.

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References

  1. Alonso A, Sasin J, Bottini N, Friedberg I, Osterman A, Godzik A, Hunter T, Dixon J, Mustelin T (2004) Protein tyrosine phosphatases in the human genome. Cell 117:699–711

    Article  PubMed  CAS  Google Scholar 

  2. Tonks NK (2006) Protein tyrosine phosphatases: from genes, to function, to disease. Nat Rev Mol Cell Biol 7:833–846

    Article  PubMed  CAS  Google Scholar 

  3. Zhang ZY (2001) Protein tyrosine phosphatases: prospects for therapeutics. Curr Opin Chem Biol 5:416–423

    Article  PubMed  CAS  Google Scholar 

  4. Zhang ZY (2002) Protein tyrosine phosphatases: structure and function, substrate specificity, and inhibitor development. Annu Rev Pharmacol Toxicol 42:209–234

    Article  PubMed  CAS  Google Scholar 

  5. Zhang ZY (2003) Chemical and mechanistic approaches to the study of protein tyrosine phosphatases. Acc Chem Res 36:385–392

    Article  PubMed  CAS  Google Scholar 

  6. Shen K, Keng YF, Wu L, Guo XL, Lawrence DS, Zhang ZY (2001) Acquisition of a specific and potent PTP1B inhibitor from a novel combinatorial library and screening procedure. J Biol Chem 276:47311–47319

    Article  PubMed  CAS  Google Scholar 

  7. Yu X, Sun JP, He Y, Guo X, Liu S, Zhou B, Hudmon A, Zhang ZY (2007) Structure, inhibitor, and regulatory mechanism of Lyp, a lymphoid-specific tyrosine phosphatase implicated in autoimmune diseases. Proc Natl Acad Sci USA 104:19767–19772

    Article  PubMed  CAS  Google Scholar 

  8. Zhang S, Chen L, Luo Y, Gunawan A, Lawrence DS, Zhang ZY (2009) Acquisition of a potent and selective TC-PTP inhibitor via a stepwise fluorophore-tagged combinatorial synthesis and screening strategy. J Am Chem Soc 131:13072–13079

    Article  PubMed  CAS  Google Scholar 

  9. Zhang X, He Y, Liu S, Yu Z, Jiang ZX, Yang Z, Dong Y, Nabinger SC, Wu L, Gunawan AM, Wang L, Chan RJ, Zhang ZY (2010) Salicylic acid based small molecule inhibitor for the oncogenic Src homology-2 domain containing protein tyrosine phosphatase-2 (SHP2). J Med Chem 53:2482–2493

    Article  PubMed  CAS  Google Scholar 

  10. Zhou B, He Y, Zhang X, Xu J, Luo Y, Wang Y, Franzblau SG, Yang Z, Chan RJ, Liu Y, Zheng J, Zhang ZY (2010) Targeting mycobacterium protein tyrosine phosphatase B for antituberculosis agents. Proc Natl Acad Sci USA 107:4573–4578

    Article  PubMed  CAS  Google Scholar 

  11. Zhang S, Chen L, Kumar S, Wu L, Lawrence DS, Zhang ZY (2007) An affinity-based fluorescence polarization assay for protein tyrosine phosphatases. Methods 42:261–267

    Article  PubMed  CAS  Google Scholar 

  12. Roehrl MH, Wang JY, Wagner G (2004) A general framework for development and data analysis of competitive high-throughput screens for small-molecule inhibitors of protein-protein interactions by fluorescence polarization. Biochemistry 43:16056–16066

    Article  PubMed  CAS  Google Scholar 

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Acknowledgement

This work was supported by NIH grant RO1 CA126937, RO1 CA152194 RO1 CA69202, and RO1 CA79954.

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Correspondence to Zhong-Yin Zhang .

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© 2012 Springer Science+Business Media New York

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Zhang, S., Chen, L., Lawrence, D.S., Zhang, ZY. (2012). A Combinatorial Strategy for the Acquisition of Potent and Specific Protein Tyrosine Phosphatase Inhibitors. In: Zheng, Y. (eds) Rational Drug Design. Methods in Molecular Biology, vol 928. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-008-3_5

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  • DOI: https://doi.org/10.1007/978-1-62703-008-3_5

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-007-6

  • Online ISBN: 978-1-62703-008-3

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