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Protocol for the Use of Light Upon Extension Real-Time PCR for the Determination of Viral Load in HBV Infection

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Diagnosis of Sexually Transmitted Diseases

Part of the book series: Methods in Molecular Biology ((MIMB,volume 903))

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Abstract

Real-time PCR has engendered wide acceptance for quantitation of hepatitis B virus (HBV) DNA in the blood due to its improved rapidity, sensitivity, reproducibility, and reduced contamination. Here we describe a cost-effective and highly sensitive HBV real-time quantitative assay based on the light upon extension real-time PCR platform and a simple and reliable HBV DNA preparation method using silica-coated magnetic beads.

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References

  1. Kessler HH (2005) Review: comparison of currently available assays for detection of HBV. Expert Rev Mol Diagn 5:531–536

    Article  PubMed  CAS  Google Scholar 

  2. Moyer LA, Mast EE (1994) Hepatitis B: virology, epidemiology, disease, and prevention, and an overview of viral hepatitis. Am J Prev Med 10(suppl):45–55

    PubMed  Google Scholar 

  3. Chan TM, Fang GX, Tang CSO, Cheng IKP, Lai KN, Ho SKN (2002) Preemptive lamivudine therapy based on HBV DNA level in HBsAg-positive kidney allograft recipients. Hepatology 36:1246–1252

    Article  PubMed  CAS  Google Scholar 

  4. Chan TM, Wu PC, Li FK, Lai CL, Cheng IK, Lai KN (1998) Treatment of fibrosing cholestatic hepatitis with lamivudine. Gastroenterology 115:177–181

    Article  PubMed  CAS  Google Scholar 

  5. Omata M (1998) Treatment of chronic hepatitis B infection. N Engl J Med 339:114–115

    Article  PubMed  CAS  Google Scholar 

  6. Mackay LM, Arden KE, Nitsche A (2002) Real time PCR in virology. Nucleic Acids Res 30:1292–1305

    Article  PubMed  CAS  Google Scholar 

  7. Nolan T, Hands RE, Bustin SA (2006) Quantification of mRNA using real-time RT-PCR. Nat Protoc 1:1559–1582

    Article  PubMed  CAS  Google Scholar 

  8. Olioso D, Boaretti M, Ligozzi M, Cascio GLo, Fontana R (2007) Detection and quantification of hepatitis B virus DNA by SYBR green real-time polymerase chain reaction. Eur J Clin Microbiol Infect Dis 26:43–50

    Article  PubMed  CAS  Google Scholar 

  9. Pas SD, Fries E, De Man RA, Osterhaus AD, Niesters HG (2000) Development of a quantitative real-time detection assay for hepatitis B virus DNA and comparison with two commercial assays. J Clin Microbiol 38:2897–2901

    PubMed  CAS  Google Scholar 

  10. Weiss J, Wu H, Farrenkopf B, Schultz T, Song G, Shah S et al (2004) Real time TaqMan PCR detection and quantitation of HBV genotypes A-G with the use of an internal quantitation standard. J Clin Virol 30:86–93

    Article  PubMed  CAS  Google Scholar 

  11. Welzel TM, Miley WJ, Parks TL, Goedert JJ, Whitby D, Ortiz-Conde BA (2006) Real-time PCR assay for detection and quantification of hepatitis B virus genotypes A to G. J Clin Microbiol 44:3325–3333

    Article  PubMed  CAS  Google Scholar 

  12. Nazarenko I, Lowe B, Darfler M, Ikonomi P, Schuster D, Rashtchian A (2002) Multiplex quantitative PCR using self-quenched primers labeled with a single fluorophore. Nucleic Acids Res 30:e37

    Article  PubMed  Google Scholar 

  13. Nazarenko I, Pires R, Lowe B, Obaidy M, Rashtchian A (2002) Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent properties of conjugated dyes. Nucleic Acids Res 30:2089–2195

    Article  PubMed  CAS  Google Scholar 

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Acknowledgements

The work was funded by the international cooperation projects of Jilin Province Science and Technology Agency (20080728). The authors would like to thank the kind support from all colleagues of the laboratory.

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Correspondence to Lixia Liu .

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© 2012 Springer Science+Business Media New York

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Li, G., Li, W., Liu, L. (2012). Protocol for the Use of Light Upon Extension Real-Time PCR for the Determination of Viral Load in HBV Infection. In: MacKenzie, C., Henrich, B. (eds) Diagnosis of Sexually Transmitted Diseases. Methods in Molecular Biology, vol 903. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-937-2_18

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  • DOI: https://doi.org/10.1007/978-1-61779-937-2_18

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-61779-936-5

  • Online ISBN: 978-1-61779-937-2

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