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DNA Assembler Method for Construction of Zeaxanthin-Producing Strains of Saccharomyces cerevisiae

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 898))

Abstract

DNA assembler enables design and rapid construction of biochemical pathways in a one-step fashion by exploitation of the in vivo homologous recombination mechanism in Saccharomyces cerevisiae. It has many applications in pathway engineering, metabolic engineering, combinatorial biology, and synthetic biology. Here we use the zeaxanthin biosynthetic pathway as an example to describe the key steps in the construction of pathways containing multiple genes using the DNA assembler approach. Methods for the construction of the clones, S. cerevisiae transformation, and zeaxanthin production and detection are shown.

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References

  1. Hjersted JL, Henson MA, Mahadevan R (2007) Genome-scale analysis of Saccharomyces cerevisiae metabolism and ethanol production in fed-batch culture. Biotechnol Bioeng 97:1190–1204

    Article  PubMed  CAS  Google Scholar 

  2. Keasling JD (2008) Synthetic biology for synthetic chemistry. ACS Chem Biol 3:64–76

    Article  PubMed  CAS  Google Scholar 

  3. Menzella HG, Reid R, Carney JR, Chandran SS, Reisinger SJ, Patel KG, Hopwood DA, Santi DV (2005) Combinatorial polyketide biosynthesis by de novo design and rearrangement of modular polyketide synthase genes. Nat Biotechnol 23:1171–1176

    Article  PubMed  CAS  Google Scholar 

  4. Pitera DJ, Paddon CJ, Newman JD, Keasling JD (2007) Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab Eng 9: 193–207

    Article  PubMed  CAS  Google Scholar 

  5. Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MC, Withers ST, Shiba Y, Sarpong R, Keasling JD (2006) Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440:940–943

    Article  PubMed  CAS  Google Scholar 

  6. Szczebara FM, Chandelier C, Villeret C, Masurel A, Bourot S, Duport C, Blanchard S, Groisillier A, Testet E, Costaglioli P, Cauet G, Degryse E, Balbuena D, Winter J, Achstetter T, Spagnoli R, Pompon D, Dumas B (2003) Total biosynthesis of hydrocortisone from a simple carbon source in yeast. Nat Biotechnol 21:143–149

    Article  PubMed  CAS  Google Scholar 

  7. Dejong JM, Liu Y, Bollon AP, Long RM, Jennewein S, Williams D, Croteau RB (2006) Genetic engineering of taxol biosynthetic genes in Saccharomyces cerevisiae. Biotechnol Bioeng 93:212–224

    Article  PubMed  CAS  Google Scholar 

  8. Yan Y, Kohli A, Koffas MA (2005) Biosynthesis of natural flavanones in Saccharomyces cerevisiae. Appl Environ Microbiol 71:5610–5613

    Article  PubMed  CAS  Google Scholar 

  9. Gunyuzlu PL, Hollis GF, Toyn JH (2001) Plasmid construction by linker-assisted homologous recombination in yeast. Biotechniques 31:1246–1250

    PubMed  CAS  Google Scholar 

  10. Ma H, Kunes S, Schatz PJ, Botstein D (1987) Plasmid construction by homologous recombination in yeast. Gene 58:201–216

    Article  PubMed  CAS  Google Scholar 

  11. Oldenburg KR, Vo KT, Michaelis S, Paddon C (1997) Recombination-mediated PCR-directed plasmid construction in vivo in yeast. Nucleic Acids Res 25:451–452

    Article  PubMed  CAS  Google Scholar 

  12. Raymond CK, Pownder TA, Sexson SL (1999) General method for plasmid construction using homologous recombination. Biotechniques 26:134–141

    PubMed  CAS  Google Scholar 

  13. Shao Z, Zhao H, Zhao H (2009) DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways. Nucleic Acids Res 37:e16

    Article  PubMed  Google Scholar 

  14. Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR (1989) Engineering hybrid genes without the use of restriction enzymes: gene-splicing by overlap extension. Gene 77:61–68

    Article  PubMed  CAS  Google Scholar 

  15. Lee FW, Da Silva NA (1997) Sequential delta-integration for the regulated insertion of cloned genes in Saccharomyces cerevisiae. Biotechnol Prog 13:368–373

    Article  PubMed  CAS  Google Scholar 

  16. Chemler JA, Yan Y, Koffas MA (2006) Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae. Microb Cell Fact 5:20

    Article  PubMed  Google Scholar 

  17. Misawa N, Nakagawa M, Kobayashi K, Yamano S, Izawa Y, Nakamura K, Harashima K (1990) Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli. J Bacteriol 172:6704–6712

    PubMed  CAS  Google Scholar 

  18. Misawa N, Shimada H (1997) Metabolic ­engineering for the production of carotenoids in non-carotenogenic bacteria and yeasts. J Biotechnol 59:169–181

    Article  PubMed  CAS  Google Scholar 

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Correspondence to Huimin Zhao .

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Shao, Z., Luo, Y., Zhao, H. (2012). DNA Assembler Method for Construction of Zeaxanthin-Producing Strains of Saccharomyces cerevisiae . In: Barredo, JL. (eds) Microbial Carotenoids From Fungi. Methods in Molecular Biology, vol 898. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-918-1_17

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  • DOI: https://doi.org/10.1007/978-1-61779-918-1_17

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-61779-917-4

  • Online ISBN: 978-1-61779-918-1

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